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[175531_s_at]

Description AV177779_rc /REP_DB=TREMBL Accession /GB=AV177779 /CHR=4 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk533f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_high_8_8 > 05      6grp_highest_nonorm > 90      6grp_total > 52      4grp_total > 04      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 119.3
(-1.6)
P 		113
(-1.8)
P 		56.9
(-3)
A 		327.3
(3)
P 		270
B 144.8
(-0.3)
P 		68.8
(-2.9)
P 		65.8
(-3)
P 		244.3
(3)
P 		179
C 114.7
(-1.9)
P 		64
(-3)
P 		79.7
(-2.6)
P 		333
(3)
P 		269
avr 126.3
(-1.5) 		81.9
(-2.6) 		67.5
(-3) 		301.5
(3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 232
1 2 3 4 5 6 range
A 128.7
(-1.1)
P 		146.4
(-0.7)
P 		288.8
(3)
P 		161.5
(-0.3)
P 		72.6
(-2.6)
P 		56.8
(-3)
P 		232
B 102.6
(-2.7)
P 		126.5
(-0.7)
P 		172.4
(3)
P 		98.8
(-3)
P 		106.7
(-2.4)
P 		103.6
(-2.6)
P 		74
C 70.8
(-2.8)
P 		119.9
(-0.1)
P 		125
(0.2)
P 		174.9
(3)
P 		86.7
(-1.9)
P 		67.7
(-3)
P 		107
avr 100.7
(-1.8) 		130.9
(-0.2) 		195.4
(3) 		145.1
(0.5) 		88.7
(-2.4) 		76
(-3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 43.4
(2.2)
P 		24.5
(-1.3)
P 		14.9
(-3)
A 		47.9
(3)
P 		33
B 46.2
(2)
P 		17
(-2.7)
P 		15.2
(-3)
P 		52.1
(3)
P 		37
C 38
(0.1)
P 		18.4
(-3)
P 		27.8
(-1.5)
P 		56.1
(3)
P 		38
avr 42.5
(1.3) 		20
(-2.9) 		19.3
(-3) 		52
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 23.7
(-1.8)
P 		52.1
(1.7)
P 		62.9
(3)
P 		41
(0.3)
P 		21.9
(-2)
P 		13.8
(-3)
P 		49
B 35.7
(0.3)
P 		42.1
(2.6)
P 		41.9
(2.5)
P 		26.2
(-3)
P 		43.3
(3)
P 		38.6
(1.4)
P 		17
C 26.2
(-1.5)
P 		36.6
(3)
P 		31.8
(0.9)
P 		35.2
(2.4)
P 		28.1
(-0.7)
P 		22.7
(-3)
P 		14
avr 28.5
(-2) 		43.6
(2.4) 		45.5
(3) 		34.1
(-0.3) 		31.1
(-1.2) 		25
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175531_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28229
Sequence Type Exemplar sequence
Representative Public ID AV177779 NCBI
Target Description AV177779_rc /REP_DB=TREMBL Accession /GB=AV177779 /CHR=4 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk533f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028270(10), NM_001028269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028270 NCBI Caenorhabditis elegans Y37E11B.1b (Y37E11B.1) mRNA, complete cds. 10/11 None
NM_001028269 NCBI Caenorhabditis elegans Y37E11B.1a (Y37E11B.1) mRNA, complete cds. 11/11 None
SNAP00000044691 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3579993:3580949:1 10/11 None
Y37E11B.1a ENSEMBL cdna:known chromosome:CEL140:IV:3579618:3580949:1 gene:Y37E11B.1 11/11 A 
Y37E11B.1b ENSEMBL cdna:known chromosome:CEL140:IV:3579993:3580987:1 gene:Y37E11B.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3580731-3581011(+) 87.14 100.0
Public Domain and Genome References
Ensembl Y37E11B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12821 Hypothetical protein Y37E11B.1a [Caenorhabditis elegans] ref|NP_001023440.1| Y37E11B.1a [Caenorhabditis elegans] 1.0E-103
blast AAP82633 Hypothetical protein Y37E11B.1b [Caenorhabditis elegans] ref|NP_001023441.1| Y37E11B.1b [Caenorhabditis elegans] 1.0E-89
blast CAE63775 Hypothetical protein CBG08313 [Caenorhabditis briggsae] 2.0E-69
blast AAP82633 Hypothetical protein Y37E11B.1b [Caenorhabditis elegans] ref|NP_001023441.1| Y37E11B.1b [Caenorhabditis elegans] 7.0E-38
blast AAD12821 Hypothetical protein Y37E11B.1a [Caenorhabditis elegans] ref|NP_001023440.1| Y37E11B.1a [Caenorhabditis elegans] 1.0E-35
blast AAP82633 Hypothetical protein Y37E11B.1b [Caenorhabditis elegans] ref|NP_001023441.1| Y37E11B.1b [Caenorhabditis elegans] 2.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.1E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.1E-6
Sequence
Target Sequence 
>C. ELEGANS:175531_S_AT
atatttccagattcacatgtccaatgtgctacgcgagtttcgatttaagtgatccattca
agatccacttgcggaaacatgataatctgaagccattcgggtgcagttattgcttcaagc
agttctcatctcgatccgtgtgccgtcgtcatgttcagctgatgcacgagaatcagaagc
gagccggtgatggagataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTCCAGATTCACATGTCCAAT 699 19 13 Antisense
GTCCAATGTGCTACGCGAGTTTCGA 514 477 31 Antisense
GCGAGTTTCGATTTAAGTGATCCAT 224 291 45 Antisense
GTGATCCATTCAAGATCCACTTGCG 588 483 61 Antisense
TCCACTTGCGGAAACATGATAATCT 252 589 76 Antisense
GATAATCTGAAGCCATTCGGGTGCA 161 423 93 Antisense
TGAAGCCATTCGGGTGCAGTTATTG 96 573 100 Antisense
GGGTGCAGTTATTGCTTCAAGCAGT 554 497 111 Antisense
CATGTTCAGCTGATGCACGAGAATC 177 209 162 Antisense
GCACGAGAATCAGAAGCGAGCCGGT 91 315 176 Antisense
GAAGCGAGCCGGTGATGGAGATAAT 578 341 188 Antisense
Sequence Source Affymetrix Proprietary Database