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[175529_s_at]

Description AU113729_rc /REP_DB=TREMBL Accession /GB=AU113729 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711a10 : 3prime end, single read.
Cluster 6grp_total > 17      4grp_total > 21      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 34.7
(2)
M 		7.3
(-3)
A 		15.9
(-1.4)
A 		40.4
(3)
A 		33
B 42.2
(1.8)
P 		38.6
(1.4)
A 		4.5
(-3)
A 		51.2
(3)
P 		47
C 24.9
(0.7)
A 		3.2
(-2.7)
A 		1.1
(-3)
A 		39.6
(3)
A 		39
avr 33.9
(1.4) 		16.4
(-1.5) 		7.2
(-3) 		43.7
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 31.8
(3)
A 		27.8
(2.2)
A 		2
(-3)
A 		4.6
(-2.5)
A 		14.7
(-0.4)
A 		9.1
(-1.6)
A 		30
B 53
(3)
P 		19.5
(-1)
A 		26.8
(-0.1)
P 		29.1
(0.2)
A 		2.3
(-3)
A 		37.5
(1.2)
A 		51
C 23.1
(3)
A 		3.8
(-3)
A 		11.3
(-0.7)
A 		5.9
(-2.3)
A 		8.6
(-1.5)
A 		8.2
(-1.6)
A 		19
avr 36
(3) 		17
(-1.1) 		13.4
(-1.9) 		13.2
(-2) 		8.5
(-3) 		18.3
(-0.9) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.6
(3)
M 		1.6
(-3)
A 		4.2
(-1.6)
A 		5.9
(-0.7)
A 		11
B 13.4
(3)
P 		9.5
(1.1)
A 		1
(-3)
A 		10.9
(1.8)
P 		12
C 8.2
(3)
A 		0.9
(-2.6)
A 		0.4
(-3)
A 		6.7
(1.8)
A 		8
avr 11.4
(3) 		4
(-1.7) 		1.9
(-3) 		7.8
(0.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.9
(0.5)
A 		9.9
(3)
A 		0.4
(-3)
A 		1.2
(-2.5)
A 		4.4
(-0.5)
A 		2.2
(-1.9)
A 		10
B 18.5
(3)
P 		6.5
(-1.1)
A 		6.5
(-1.1)
P 		7.7
(-0.7)
A 		0.9
(-3)
A 		14
(1.5)
A 		18
C 8.6
(3)
A 		1.2
(-3)
A 		2.9
(-1.6)
A 		1.2
(-3)
A 		2.8
(-1.7)
A 		2.7
(-1.8)
A 		7
avr 11
(3) 		5.9
(-0.7) 		3.3
(-2.6) 		3.4
(-2.5) 		2.7
(-3) 		6.3
(-0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175529_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22261
Sequence Type Exemplar sequence
Representative Public ID AU113729 NCBI
Target Description AU113729_rc /REP_DB=TREMBL Accession /GB=AU113729 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077342 NCBI Caenorhabditis elegans GUstatory Receptor family member (gur-3) (gur-3) mRNA, complete cds. 11/11 None
SNAP00000031660 ENSEMBL cdna:SNAP chromosome:CEL140:X:10402582:10403451:-1 11/11 None
GENEFINDER00000031669 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10402582:10403969:-1 11/11 None
ZC504.5 ENSEMBL cdna:known chromosome:CEL140:X:10402453:10406231:-1 gene:ZC504.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10402534-10402910(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol gur-3
Ensembl ZC504.5
Entrez Gene 181245 Entrez gene
SwissProt O18280 EMBL-EBI
WormBase CE30223 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7608 sensory perception of smell inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4984 olfactory receptor activity inferred from electronic annotation QuickGO AmiGO
5549 odorant binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90343 Hypothetical protein ZC504.5 [Caenorhabditis elegans] ref|NP_509743.2| GUstatory Receptor family member (gur-3) [Caenorhabditis elegans] 0.0
blast AAK70489 putative chemoreceptor GUR-3 [Caenorhabditis elegans] 0.0
blast CAE70575 Hypothetical protein CBG17231 [Caenorhabditis briggsae] 0.0
blast CAA90343 Hypothetical protein ZC504.5 [Caenorhabditis elegans] ref|NP_509743.2| GUstatory Receptor family member (gur-3) [Caenorhabditis elegans] 1.0E-142
blast AAK70489 putative chemoreceptor GUR-3 [Caenorhabditis elegans] 1.0E-142
blast CAE70575 Hypothetical protein CBG17231 [Caenorhabditis briggsae] 1.0E-140
blast CAA90343 Hypothetical protein ZC504.5 [Caenorhabditis elegans] ref|NP_509743.2| GUstatory Receptor family member (gur-3) [Caenorhabditis elegans] 8.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509743.2 7 74-96,116-138,173-192,212-234,291-313,328-350,406-424
ZC504.5 7 74-96,116-138,173-192,212-234,291-313,328-350,406-424
SNAP00000031660 1 71-89
GENEFINDER00000031669 4 20-42,98-120,135-157,213-231
Sequence
Target Sequence 
>C. ELEGANS:175529_S_AT
gagttttctttcgtttcaaatgcatgctacaaagcttactctcaccgccgggaatttctt
catgatgaatcgcaaaattatgatcagtttgttctctgcaattttcacatattttcttat
tttggtacagtttgatgctgaaaaggagcgagccggagaatgcaataatcaatctcgtgt
gctcattgtccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTTCTTTCGTTTCAAATGCAT 192 399 40 Antisense
TTCTTTCGTTTCAAATGCATGCTAC 76 691 45 Antisense
ATGCTACAAAGCTTACTCTCACCGC 174 43 63 Antisense
TTACTCTCACCGCCGGGAATTTCTT 484 679 75 Antisense
GAATTTCTTCATGATGAATCGCAAA 594 325 91 Antisense
TATTTTCTTATTTTGGTACAGTTTG 242 663 149 Antisense
ATTTTGGTACAGTTTGATGCTGAAA 430 13 158 Antisense
GATGCTGAAAAGGAGCGAGCCGGAG 619 413 173 Antisense
GAGCGAGCCGGAGAATGCAATAATC 243 387 185 Antisense
CAATAATCAATCTCGTGTGCTCATT 468 181 202 Antisense
TCAATCTCGTGTGCTCATTGTCCAA 292 633 208 Antisense
Sequence Source Affymetrix Proprietary Database