[Home] | [Total List]

[175527_at]

Description AV177688_rc /REP_DB=TREMBL Accession /GB=AV177688 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk532c12 : 3prime end, single read.
Cluster 6grp_total > 50      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 30.8
(3)
A 		10.9
(-3)
A 		22.5
(0.5)
A 		27.7
(2.1)
A 		20
B 29.8
(-2.2)
A 		27.8
(-3)
A 		42.2
(3)
A 		29.9
(-2.1)
A 		14
C 32.9
(0.9)
A 		22.6
(-2.2)
A 		20
(-3)
A 		40
(3)
A 		20
avr 31.2
(2.4) 		20.4
(-3) 		28.2
(0.9) 		32.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 16.4
(-3)
A 		30.2
(3)
A 		22.7
(-0.3)
A 		18
(-2.3)
A 		26.8
(1.5)
A 		21.7
(-0.7)
A 		14
B 29.5
(3)
M 		15.7
(0.1)
A 		28.3
(2.8)
A 		13.5
(-0.3)
A 		0.5
(-3)
A 		15
(0)
A 		29
C 26.9
(-3)
A 		27
(-3)
A 		34.7
(-1.7)
A 		63.7
(3)
M 		27.3
(-2.9)
A 		32.9
(-2)
P 		37
avr 24.3
(-0.3) 		24.3
(-0.3) 		28.6
(1.6) 		31.7
(3) 		18.2
(-3) 		23.2
(-0.8) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 11.2
(3)
A 		2.4
(-3)
A 		5.9
(-0.6)
A 		4.1
(-1.8)
A 		9
B 9.5
(2.5)
A 		6.9
(-2.1)
A 		9.8
(3)
A 		6.4
(-3)
A 		3
C 10.9
(3)
A 		6.5
(-3)
A 		7
(-2.3)
A 		6.7
(-2.7)
A 		4
avr 10.5
(3) 		5.3
(-3) 		7.6
(-0.3) 		5.7
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3
(-3)
A 		10.7
(3)
A 		4.9
(-1.5)
A 		4.6
(-1.8)
A 		8.1
(1)
A 		5.3
(-1.2)
A 		8
B 10.3
(3)
M 		5.2
(-0)
A 		6.9
(1)
A 		3.6
(-1)
A 		0.2
(-3)
A 		5.6
(0.2)
A 		10
C 10
(-0.7)
A 		8.2
(-3)
A 		8.8
(-2.2)
A 		12.8
(3)
M 		8.8
(-2.2)
A 		11
(0.7)
P 		5
avr 7.8
(2.5) 		8
(3) 		6.9
(0.1) 		7
(0.4) 		5.7
(-3) 		7.3
(1.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175527_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22256
Sequence Type Exemplar sequence
Representative Public ID AV177688 NCBI
Target Description AV177688_rc /REP_DB=TREMBL Accession /GB=AV177688 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk532c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076930 NCBI Caenorhabditis elegans C39D10.5 (C39D10.5) mRNA, complete cds. 11/11 A 
C39D10.5 ENSEMBL cdna:known chromosome:CEL140:X:7890352:7892338:-1 gene:C39D10.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015643 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7890360-7891346(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C39D10.5
Entrez Gene 181048 Entrez gene
SwissProt Q18526 EMBL-EBI
WormBase CE27105 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39210 Hypothetical protein C39D10.5 [Caenorhabditis elegans] ref|NP_509331.1| C39D10.5 [Caenorhabditis elegans] 1.0E-105
blast T15784 hypothetical protein C39D10.5 - Caenorhabditis elegans 1.0E-102
blast CAE70316 Hypothetical protein CBG16843 [Caenorhabditis briggsae] 5.0E-22
Sequence
Target Sequence 
>C. ELEGANS:175527_AT
acactgagttctggccataccttaaataattggaacattcaagcttcgaaagattatcga
ctacttaattattcagtaaaaaaaacaattttaagtttgaggaatactattttaattttg
tgctctattttttatttccaaattatattattcttcaatcttctagtttttaattttccg
gactgttttcctgtgtcattatatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTGAGTTCTGGCCATACCTTAA 299 109 47 Antisense
GAGTTCTGGCCATACCTTAAATAAT 152 397 52 Antisense
TAATTGGAACATTCAAGCTTCGAAA 241 633 73 Antisense
AGCTTCGAAAGATTATCGACTACTT 89 77 88 Antisense
GATTATCGACTACTTAATTATTCAG 293 429 98 Antisense
GGAATACTATTTTAATTTTGTGCTC 190 529 147 Antisense
TTAATTTTGTGCTCTATTTTTTATT 680 683 158 Antisense
ATTTCCAAATTATATTATTCTTCAA 516 17 180 Antisense
TATTCTTCAATCTTCTAGTTTTTAA 586 663 195 Antisense
TTTTCCGGACTGTTTTCCTGTGTCA 428 677 220 Antisense
ACTGTTTTCCTGTGTCATTATATAT 303 97 228 Antisense
Sequence Source Affymetrix Proprietary Database