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[175526_at]

Description AV182722_rc /REP_DB=TREMBL Accession /GB=AV182722 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk641g10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 90      6grp_total > 37      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 217.9
(3)
P 		184.3
(0.4)
P 		140.9
(-3)
P 		160.7
(-1.5)
P 		77
B 185
(3)
P 		185.4
(3)
P 		131.1
(-3)
P 		152.8
(-0.6)
P 		54
C 216.4
(2.6)
P 		187.6
(0.3)
P 		221.6
(3)
P 		145.7
(-3)
P 		76
avr 206.4
(3) 		185.8
(0.7) 		164.5
(-1.7) 		153.1
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 191.1
(0.7)
P 		225.5
(3)
P 		137
(-3)
P 		151.6
(-2)
P 		141.9
(-2.7)
P 		215.3
(2.3)
P 		89
B 206.8
(3)
P 		164.1
(-0.6)
P 		135.1
(-3)
P 		176.4
(0.5)
P 		144
(-2.3)
P 		175.8
(0.4)
P 		72
C 213.9
(3)
P 		165.5
(0.2)
P 		176.2
(0.8)
P 		110
(-3)
P 		157.2
(-0.3)
P 		167.8
(0.3)
P 		104
avr 203.9
(3) 		185
(1) 		149.4
(-2.6) 		146
(-3) 		147.7
(-2.8) 		186.3
(1.2) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 79.3
(3)
P 		40
(-1.2)
P 		36.8
(-1.6)
P 		23.5
(-3)
P 		56
B 59
(3)
P 		45.8
(0.2)
P 		30.4
(-3)
P 		32.6
(-2.5)
P 		29
C 71.6
(2.4)
P 		53.9
(0.3)
P 		77.2
(3)
P 		24.6
(-3)
P 		53
avr 70
(3) 		46.6
(-0.3) 		48.1
(-0) 		26.9
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 35.2
(-2.4)
P 		80.2
(3)
P 		29.8
(-3)
P 		38.4
(-2)
P 		42.8
(-1.5)
P 		52.4
(-0.3)
P 		50
B 71.9
(3)
P 		54.6
(0.3)
P 		32.8
(-3)
P 		46.7
(-0.9)
P 		58.5
(0.9)
P 		65.6
(2)
P 		39
C 79.3
(3)
P 		50.5
(-0)
P 		44.9
(-0.6)
P 		22.1
(-3)
P 		50.9
(0)
P 		56.2
(0.6)
P 		57
avr 62.1
(3) 		61.8
(2.9) 		35.8
(-3) 		35.7
(-3) 		50.7
(0.4) 		58.1
(2.1) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20511
Sequence Type Exemplar sequence
Representative Public ID AV182722 NCBI
Target Description AV182722_rc /REP_DB=TREMBL Accession /GB=AV182722 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk641g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000022978 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14235185:14243481:-1 None
SNAP00000022969 ENSEMBL cdna:SNAP chromosome:CEL140:II:14235185:14247145:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14234933-14235223(-) 83.45 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54451 Hypothetical protein Y48B6A.11 [Caenorhabditis elegans] ref|NP_496969.1| Y48B6A.11 [Caenorhabditis elegans] 0.0
blast CAE73246 Hypothetical protein CBG20662 [Caenorhabditis briggsae] 0.0
blast AAH47193 Jmjd2al protein [Danio rerio] 8.0E-88
blast AAH47193 Jmjd2al protein [Danio rerio] 1.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 1.2E-60
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 1.2E-60
Pfam IPR003349 EMBL-EBI Transcription factor jumonji, JmjN 2.6E-13
Sequence
Target Sequence 
>C. ELEGANS:175526_AT
gaagcgagaactgaacgcgtatctcaaaaaatagctttaataaataaataaatattcgat
tttttaaaatttactattaaatagtccctgacaaaaaattcttgtcaaaatgtaatatat
tctctctttcccgcccgtctaccctcaaatatgtgatctctgcgcctcttttccccccag
tttttttttgtacgaaaagtcgaagaatctctaattatccctgtttttctgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCGAGAACTGAACGCGTATCTC 649 343 21 Antisense
GAACGCGTATCTCAAAAAATAGCTT 431 345 33 Antisense
TACTATTAAATAGTCCCTGACAAAA 320 645 92 Antisense
ATAGTCCCTGACAAAAAATTCTTGT 37 21 101 Antisense
AATGTAATATATTCTCTCTTTCCCG 26 165 129 Antisense
CCCGTCTACCCTCAAATATGTGATC 255 261 154 Antisense
CTCAAATATGTGATCTCTGCGCCTC 611 227 164 Antisense
TACGAAAAGTCGAAGAATCTCTAAT 175 647 211 Antisense
GAAGAATCTCTAATTATCCCTGTTT 219 341 222 Antisense
AATCTCTAATTATCCCTGTTTTTCT 332 169 226 Antisense
TCTAATTATCCCTGTTTTTCTGTTT 578 611 230 Antisense
Sequence Source Affymetrix Proprietary Database