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[175525_at]

Description AV180852_rc /REP_DB=TREMBL Accession /GB=AV180852 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 56      4grp_high_8_8 > 26      6grp_highest_nonorm > 75      6grp_total > 34      4grp_total > 37      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 446
1 2 3 4 range
A 860.4
(-1.1)
P 		969.5
(3)
P 		844.9
(-1.7)
P 		808.9
(-3)
P 		161
B 1123.4
(3)
P 		795.5
(-1.4)
P 		677.6
(-3)
P 		873.1
(-0.4)
P 		446
C 855
(-0.6)
P 		935.6
(3)
P 		799.4
(-3)
P 		852.7
(-0.7)
P 		136
avr 946.3
(3) 		900.2
(1.4) 		774
(-3) 		844.9
(-0.5) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 588
1 2 3 4 5 6 range
A 1087.9
(3)
P 		678
(-3)
P 		1024.8
(2.1)
P 		806.9
(-1.1)
P 		687.4
(-2.9)
P 		837.4
(-0.7)
P 		410
B 1164.7
(3)
P 		895.5
(-1.2)
P 		809.5
(-2.5)
P 		819.3
(-2.4)
P 		800.1
(-2.7)
P 		779.6
(-3)
P 		385
C 738.3
(-0.4)
P 		924.4
(2.6)
P 		952.4
(3)
P 		799.1
(0.6)
P 		576.7
(-3)
P 		780.9
(0.3)
P 		376
avr 997
(3) 		832.6
(-0.2) 		928.9
(1.7) 		808.4
(-0.7) 		688.1
(-3) 		799.3
(-0.8) 		309
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 313.3
(3)
P 		210.4
(-0.2)
P 		220.9
(0.2)
P 		118.4
(-3)
P 		195
B 358.2
(3)
P 		196.5
(-1.8)
P 		157
(-3)
P 		186.1
(-2.1)
P 		201
C 283
(3)
P 		269
(2.4)
P 		278.6
(2.8)
P 		143.8
(-3)
P 		139
avr 318.2
(3) 		225.3
(-0.3) 		218.8
(-0.5) 		149.4
(-3) 		169

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 200.5
(-3)
P 		241.1
(3)
P 		223.2
(0.4)
P 		204.6
(-2.4)
P 		207.4
(-2)
P 		203.9
(-2.5)
P 		41
B 405.3
(3)
P 		298.1
(-0.1)
P 		196.6
(-3)
P 		217
(-2.4)
P 		325.1
(0.7)
P 		290.7
(-0.3)
P 		209
C 273.6
(2.6)
P 		282
(3)
P 		242.4
(1)
P 		160.7
(-3)
P 		186.6
(-1.7)
P 		261.4
(2)
P 		121
avr 293.1
(3) 		273.7
(1.8) 		220.7
(-1.4) 		194.1
(-3) 		239.7
(-0.2) 		252
(0.5) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20459
Sequence Type Exemplar sequence
Representative Public ID AV180852 NCBI
Target Description AV180852_rc /REP_DB=TREMBL Accession /GB=AV180852 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058369 NCBI Caenorhabditis elegans Y18H1A.4 (Y18H1A.4) mRNA, complete cds. 11/11 None
SNAP00000022330 ENSEMBL cdna:SNAP chromosome:CEL140:I:692186:692787:-1 9/11 None
GENEFINDER00000022386 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:692186:694633:-1 9/11 None
Y18H1A.4 ENSEMBL cdna:known chromosome:CEL140:I:692040:694653:-1 gene:Y18H1A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:692105-692612(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18H1A.4
Entrez Gene 171661 Entrez gene
SwissProt Q9BL94 EMBL-EBI
WormBase CE29367 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_490770 Y18H1A.4 [Caenorhabditis elegans] gb|AAK21514.2| Hypothetical protein Y18H1A.4 [Caenorhabditis elegans] 1.0E-129
blast CAE61315 Hypothetical protein CBG05150 [Caenorhabditis briggsae] 1.0E-85
blast NP_490770 Y18H1A.4 [Caenorhabditis elegans] gb|AAK21514.2| Hypothetical protein Y18H1A.4 [Caenorhabditis elegans] 3.0E-49
blast CAE61315 Hypothetical protein CBG05150 [Caenorhabditis briggsae] 1.0E-39
blast AAK39390 Hypothetical protein ZK484.6 [Caenorhabditis elegans] ref|NP_491756.2| ZK484.6 [Caenorhabditis elegans] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001345 EMBL-EBI Phosphoglycerate/bisphosphoglycerate mutase 9.4E-5
Sequence
Target Sequence 
>C. ELEGANS:175525_AT
tatgaaggaaacctcctactcgtcggccacggagcatcaatcggcgcttgccacgaagtg
ctaatgggcgatttcaaatacgtcgggcaggctaccgtatccgagttcgaagagacggcg
cccggaaaatatcggcacaattatagctccgactcgtctcatttgtcggataagaagaac
ttgaggccctggtagttgagatgcttcagtcagaaatcgctgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGAAGGAAACCTCCTACTCGTCG 646 653 19 Antisense
TCAATCGGCGCTTGCCACGAAGTGC 565 633 55 Antisense
GGGCGATTTCAAATACGTCGGGCAG 75 489 84 Antisense
AATACGTCGGGCAGGCTACCGTATC 46 151 95 Antisense
AGGCTACCGTATCCGAGTTCGAAGA 145 53 107 Antisense
TCCGAGTTCGAAGAGACGGCGCCCG 513 235 118 Antisense
GACGGCGCCCGGAAAATATCGGCAC 395 373 132 Antisense
CGGCACAATTATAGCTCCGACTCGT 308 243 151 Antisense
GACTCGTCTCATTTGTCGGATAAGA 130 375 169 Antisense
GAGGCCCTGGTAGTTGAGATGCTTC 321 405 201 Antisense
GATGCTTCAGTCAGAAATCGCTGTT 625 413 218 Antisense
Sequence Source Affymetrix Proprietary Database