[Home] | [Total List]

[175524_at]

Description AU113530_rc /REP_DB=TREMBL Accession /GB=AU113530 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk708g10 : 3prime end, single read.
Cluster 6grp_total > 93      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 65.3
(0.7)
A 		10.6
(-3)
A 		58.9
(0.2)
A 		100.1
(3)
A 		90
B 58
(-1.5)
A 		82.3
(1.4)
A 		45.1
(-3)
A 		95.3
(3)
M 		50
C 50
(-3)
A 		82.5
(-0.9)
A 		56
(-2.6)
A 		143.1
(3)
A 		93
avr 57.8
(-2.5) 		58.5
(-2.5) 		53.3
(-3) 		112.8
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 74.6
(-2.6)
A 		65.5
(-3)
A 		96.7
(-1.5)
P 		72.9
(-2.6)
A 		187.7
(3)
P 		91.9
(-1.7)
M 		122
B 98.7
(-0.7)
P 		79.7
(-1.5)
P 		48.6
(-3)
M 		58.4
(-2.5)
A 		177
(3)
P 		97.6
(-0.7)
P 		128
C 74.4
(0.4)
P 		64.9
(-0.1)
P 		67.1
(0)
A 		7.6
(-3)
A 		124.9
(3)
P 		109.1
(2.2)
P 		117
avr 82.6
(-1.1) 		70
(-1.8) 		70.8
(-1.7) 		46.3
(-3) 		163.2
(3) 		99.5
(-0.3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 23.8
(3)
A 		2.3
(-3)
A 		15.4
(0.7)
A 		14.7
(0.5)
A 		22
B 18.5
(1.9)
A 		20.3
(3)
A 		10.5
(-3)
A 		20.3
(3)
M 		10
C 16.6
(-3)
A 		23.7
(2.7)
A 		19.5
(-0.7)
A 		24.1
(3)
A 		8
avr 19.6
(2.9) 		15.4
(-2.6) 		15.1
(-3) 		19.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 13.7
(-3)
A 		23.3
(-1.7)
A 		21.1
(-2)
P 		18.5
(-2.3)
A 		56.6
(3)
P 		22.4
(-1.8)
M 		43
B 34.3
(-0.8)
P 		26.5
(-1.5)
P 		11.8
(-3)
M 		15.5
(-2.6)
A 		71.9
(3)
P 		36.4
(-0.5)
P 		60
C 27.6
(1)
P 		19.8
(-0.2)
P 		17.1
(-0.6)
A 		1.5
(-3)
A 		40.4
(3)
P 		36.5
(2.4)
P 		39
avr 25.2
(-1.2) 		23.2
(-1.5) 		16.7
(-2.3) 		11.8
(-3) 		56.3
(3) 		31.8
(-0.3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22230
Sequence Type Exemplar sequence
Representative Public ID AU113530 NCBI
Target Description AU113530_rc /REP_DB=TREMBL Accession /GB=AU113530 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk708g10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076561 NCBI Caenorhabditis elegans C41G11.1 (C41G11.1) mRNA, complete cds. 11/11 A 
SNAP00000015674 ENSEMBL cdna:SNAP chromosome:CEL140:X:5717566:5720146:-1 11/11 None
C41G11.1 ENSEMBL cdna:known chromosome:CEL140:X:5717559:5720193:-1 gene:C41G11.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015680 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5717568-5718335(-) 100.0 100.0
Public Domain and Genome References
Ensembl C41G11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508962 C41G11.1 [Caenorhabditis elegans] 0.0
blast AAZ86797 Hypothetical protein C41G11.1a [Caenorhabditis elegans] 0.0
blast AAZ86798 Hypothetical protein C41G11.1b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 5.4E-5
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 4.8E-6
Sequence
Target Sequence 
>C. ELEGANS:175524_AT
ggagtgcatgggagggtacaaaatcccatttgtgtacatagggagtgtaccaaataacag
gttctctaaattggatataacttccctaaacgctactattactggatacaaagctcgtga
cagtttgatgcacaatggagaaatgctggaaaagttggagactgtcaagctatggggacc
ttgcaccggaacggaaactattcgatttgaagatcacgcaactagaaaacgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTGCATGGGAGGGTACAAAATC 587 495 13 Antisense
CAAAATCCCATTTGTGTACATAGGG 73 191 31 Antisense
GAGTGTACCAAATAACAGGTTCTCT 449 399 55 Antisense
GATATAACTTCCCTAAACGCTACTA 402 423 86 Antisense
TTCCCTAAACGCTACTATTACTGGA 281 683 94 Antisense
ATTACTGGATACAAAGCTCGTGACA 431 13 110 Antisense
AGCTCGTGACAGTTTGATGCACAAT 163 81 124 Antisense
GGAGACTGTCAAGCTATGGGGACCT 258 519 169 Antisense
GTCAAGCTATGGGGACCTTGCACCG 463 463 176 Antisense
GACCTTGCACCGGAACGGAAACTAT 93 383 189 Antisense
AGATCACGCAACTAGAAAACGACGA 153 67 223 Antisense
Sequence Source Affymetrix Proprietary Database