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[175523_at]

Description AV181731_rc /REP_DB=TREMBL Accession /GB=AV181731 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk624b12 : 3prime end, single read.
Cluster 6grp_total > 55      4grp_total > 24      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 11.2
(-3)
A 		29.2
(-0.9)
A 		44.4
(0.8)
A 		63.4
(3)
A 		52
B 13.8
(-1.7)
A 		5.3
(-3)
A 		43.3
(3)
A 		22
(-0.4)
A 		38
C 6
(-3)
A 		10.4
(-2.5)
A 		16.3
(-1.9)
A 		63.6
(3)
A 		58
avr 10.3
(-3) 		15
(-2.3) 		34.7
(0.7) 		49.7
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 34.6
(2.7)
A 		28
(-0.2)
A 		30.6
(0.9)
A 		35.4
(3)
A 		21.4
(-3)
A 		25.8
(-1.1)
A 		14
B 18.6
(-2.1)
A 		25.9
(-1.2)
A 		62
(3)
A 		19.2
(-2)
A 		10.7
(-3)
A 		43.8
(0.9)
A 		51
C 56.1
(-0)
A 		71.6
(1.2)
A 		69
(1)
A 		20
(-3)
A 		40.9
(-1.3)
A 		93.3
(3)
P 		73
avr 36.4
(-0.6) 		41.8
(0.5) 		53.9
(2.9) 		24.9
(-2.9) 		24.3
(-3) 		54.3
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.1
(-3)
A 		6.3
(-1.2)
A 		11.6
(3)
A 		9.3
(1.2)
A 		8
B 4.4
(-0.9)
A 		1.3
(-3)
A 		10
(3)
A 		4.7
(-0.7)
A 		9
C 2
(-3)
A 		3
(-2.3)
A 		5.7
(-0.4)
A 		10.7
(3)
A 		9
avr 3.5
(-3) 		3.5
(-3) 		9.1
(3) 		8.2
(2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 6.4
(-2.8)
A 		10
(3)
A 		6.7
(-2.4)
A 		9
(1.4)
A 		6.5
(-2.7)
A 		6.3
(-3)
A 		4
B 6.5
(-1.9)
A 		8.6
(-0.9)
A 		15.1
(2.4)
A 		5.1
(-2.6)
A 		4.3
(-3)
A 		16.3
(3)
A 		12
C 20.8
(0.7)
A 		21.8
(0.9)
A 		17.6
(0)
A 		4
(-3)
A 		13.2
(-1)
A 		31.2
(3)
P 		27
avr 11.2
(-0.4) 		13.5
(0.8) 		13.1
(0.6) 		6
(-3) 		8
(-2) 		17.9
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20077
Sequence Type Exemplar sequence
Representative Public ID AV181731 NCBI
Target Description AV181731_rc /REP_DB=TREMBL Accession /GB=AV181731 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk624b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170827 NCBI Caenorhabditis elegans Y23H5B.7a (Y23H5B.7) mRNA, complete cds. 11/11 None
Y23H5B.7a ENSEMBL cdna:known chromosome:CEL140:I:2506780:2513711:-1 gene:Y23H5B.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170828 1/11 Cross Hyb Matching Probes None
SNAP00000013330 4/11 Cross Hyb Matching Probes None
GENEFINDER00000009417 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022294 1/11 Cross Hyb Matching Probes None
SNAP00000027304 6/11 Cross Hyb Matching Probes None
GENEFINDER00000027333 6/11 Cross Hyb Matching Probes None
Y23H5B.7b 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171812 3 1 NM_170827 175523_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Ensembl Y23H5B.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68428 Hypothetical protein Y23H5B.7a [Caenorhabditis elegans] ref|NP_740811.1| Y23H5B.7a [Caenorhabditis elegans] 1.0E-107
blast AAL77191 Hypothetical protein Y23H5B.7b [Caenorhabditis elegans] ref|NP_740812.1| Y23H5B.7b [Caenorhabditis elegans] 2.0E-88
blast CAA21028 Hypothetical protein Y39A1A.16 [Caenorhabditis elegans] ref|NP_499353.1| Y39A1A.16 [Caenorhabditis elegans] 9.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.3E-6
Sequence
Target Sequence 
>C. ELEGANS:175523_AT
ggatagaaatcgtcgcccacaatgttttcgaaagaacggacgaaatcggtcaaggacaac
gatttctacagcgaggacaattcgtgtggaggagaaactccagttcaaaccgccgccaag
ctgtcgttggtcgcattgtcgcgccgagacccgtcgtcgttaaaggctgcgcctttaacc
cggaaatgcctatataaggagaggaggacgctcattgaggatcatttcttaactctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATAGAAATCGTCGCCCACAATGT 684 509 26 Antisense
ATCGTCGCCCACAATGTTTTCGAAA 441 35 34 Antisense
GAACGGACGAAATCGGTCAAGGACA 539 331 59 Antisense
GGTCAAGGACAACGATTTCTACAGC 92 503 73 Antisense
ACAACGATTTCTACAGCGAGGACAA 104 113 81 Antisense
GCGAGGACAATTCGTGTGGAGGAGA 248 291 96 Antisense
CCAAGCTGTCGTTGGTCGCATTGTC 163 277 141 Antisense
CGTCGTCGTTAAAGGCTGCGCCTTT 390 245 177 Antisense
GCCTTTAACCCGGAAATGCCTATAT 588 281 196 Antisense
GAGAGGAGGACGCTCATTGAGGATC 240 395 224 Antisense
CATTGAGGATCATTTCTTAACTCTT 190 217 238 Antisense
Sequence Source Affymetrix Proprietary Database