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[175522_s_at]

Description AU116131_rc /REP_DB=TREMBL Accession /GB=AU116131 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_high_8_8 > 07      6grp_highest_nonorm > 92      6grp_total > 76      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 179.7
(-1.1)
P 		132.7
(-3)
P 		228.4
(0.8)
P 		283.6
(3)
P 		151
B 185.1
(-2.5)
P 		193.4
(-2.2)
P 		166.1
(-3)
P 		382.7
(3)
P 		217
C 164.9
(-1.9)
P 		129.9
(-3)
A 		191.1
(-1.1)
P 		321.5
(3)
P 		192
avr 176.6
(-2.2) 		152
(-3) 		195.2
(-1.5) 		329.3
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 622
1 2 3 4 5 6 range
A 123.2
(-3)
P 		131
(-2.9)
P 		249.5
(-1.6)
P 		266.7
(-1.4)
P 		220.2
(-1.9)
P 		665.5
(3)
P 		542
B 100.6
(-3)
P 		211.8
(-1.7)
P 		193.1
(-1.9)
P 		243.6
(-1.4)
P 		288.6
(-0.9)
P 		628.9
(3)
P 		528
C 88.4
(-3)
P 		163.2
(-2.3)
P 		252.9
(-1.4)
P 		297.5
(-1)
P 		248.9
(-1.5)
P 		710.1
(3)
P 		622
avr 104.1
(-3) 		168.7
(-2.3) 		231.8
(-1.6) 		269.3
(-1.2) 		252.6
(-1.4) 		668.2
(3) 		564
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 65.4
(3)
P 		28.8
(-3)
P 		59.7
(2.1)
P 		41.5
(-0.9)
P 		37
B 59
(-0.1)
P 		47.8
(-1.7)
P 		38.5
(-3)
P 		81.5
(3)
P 		43
C 54.6
(0.5)
P 		37.4
(-3)
A 		66.6
(3)
P 		54.2
(0.5)
P 		29
avr 59.7
(3) 		38
(-3) 		54.9
(1.7) 		59.1
(2.8) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 22.7
(-3)
P 		46.6
(-2)
P 		54.3
(-1.6)
P 		67.6
(-1.1)
P 		66.5
(-1.1)
P 		162
(3)
P 		139
B 35
(-3)
P 		70.5
(-1.9)
P 		46.9
(-2.6)
P 		64.5
(-2.1)
P 		117.3
(-0.5)
P 		234.5
(3)
P 		200
C 32.8
(-3)
P 		49.8
(-2.5)
P 		64.4
(-2.1)
P 		59.8
(-2.2)
P 		80.5
(-1.6)
P 		237.7
(3)
P 		205
avr 30.2
(-3) 		55.6
(-2.2) 		55.2
(-2.2) 		64
(-1.9) 		88.1
(-1.1) 		211.4
(3) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175522_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21211
Sequence Type Exemplar sequence
Representative Public ID AU116131 NCBI
Target Description AU116131_rc /REP_DB=TREMBL Accession /GB=AU116131 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk741a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065868 NCBI Caenorhabditis elegans F01F1.11 (F01F1.11) mRNA, complete cds. 11/11 None
SNAP00000009925 ENSEMBL cdna:SNAP chromosome:CEL140:III:5869714:5871736:-1 11/11 None
GENEFINDER00000009938 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5869714:5872272:-1 11/11 None
F01F1.11 ENSEMBL cdna:known chromosome:CEL140:III:5869642:5872346:-1 gene:F01F1.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5869713-5870362(-) 98.57 98.57
Public Domain and Genome References
Gene Title
Ensembl F01F1.11
Entrez Gene 175825 Entrez gene
SwissProt Q19090 EMBL-EBI
WormBase CE26883 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67222 Hypothetical protein F01F1.11 [Caenorhabditis elegans] ref|NP_498269.1| F01F1.11 [Caenorhabditis elegans] 0.0
blast T15949 hypothetical protein F01F1.11 - Caenorhabditis elegans 0.0
blast CAE64377 Hypothetical protein CBG09064 [Caenorhabditis briggsae] 1.0E-116
Sequence
Target Sequence 
>C. ELEGANS:175522_S_AT
ggatccattgacgagattctttcgagatgcaattacagattgcttaaatgagctccgaga
gatgccgttttgcctgaacacgggcattctgttgagcccgttgcgtggtcgagaacaagg
aacttcttgtgttacatggaaagattatgaaggatttttgaaaagagaacacgatctgcc
ttccgaagcgaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCCATTGACGAGATTCTTTCGA 387 513 22 Antisense
GAGATTCTTTCGAGATGCAATTACA 456 397 34 Antisense
AAATGAGCTCCGAGAGATGCCGTTT 414 119 67 Antisense
TCCGAGAGATGCCGTTTTGCCTGAA 661 595 75 Antisense
GATGCCGTTTTGCCTGAACACGGGC 332 415 82 Antisense
GCCTGAACACGGGCATTCTGTTGAG 226 283 93 Antisense
CGGGCATTCTGTTGAGCCCGTTGCG 437 243 102 Antisense
GCCCGTTGCGTGGTCGAGAACAAGG 58 287 117 Antisense
AAGGAACTTCTTGTGTTACATGGAA 26 161 138 Antisense
AAAAGAGAACACGATCTGCCTTCCG 115 133 182 Antisense
CACGATCTGCCTTCCGAAGCGAATA 4 201 191 Antisense
Sequence Source Affymetrix Proprietary Database