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[175521_at]

Description AV199512_rc /REP_DB=TREMBL Accession /GB=AV199512 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547e10 : 3prime end, single read.
Cluster 6grp_total > 72      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 83.8
(0.5)
A 		70.3
(-3)
A 		89.8
(2)
A 		93.5
(3)
A 		23
B 84.4
(3)
A 		15.9
(-2.3)
A 		32.8
(-1)
A 		6.3
(-3)
A 		78
C 27.2
(-2.2)
A 		17.2
(-3)
A 		88.2
(3)
A 		50.7
(-0.2)
A 		71
avr 65.1
(2.1) 		34.5
(-3) 		70.3
(3) 		50.2
(-0.4) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 24.5
(-2.3)
A 		44.4
(-1.3)
A 		129.8
(2.8)
A 		124.5
(2.5)
A 		134.2
(3)
P 		9
(-3)
A 		125
B 127.1
(-0.5)
A 		145
(1)
P 		167.3
(3)
M 		132.1
(-0.1)
M 		134
(0.1)
P 		99.2
(-3)
P 		68
C 13.2
(-3)
A 		124.6
(2.6)
P 		44.4
(-1.4)
A 		119.1
(2.3)
M 		62.2
(-0.6)
A 		133.5
(3)
P 		120
avr 54.9
(-3) 		104.7
(1.3) 		113.8
(2) 		125.2
(3) 		110.1
(1.7) 		80.6
(-0.8) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 30.5
(3)
A 		15.3
(-2.4)
A 		23.5
(0.5)
A 		13.7
(-3)
A 		17
B 26.9
(3)
A 		3.9
(-2.4)
A 		7.6
(-1.5)
A 		1.3
(-3)
A 		26
C 9
(-2)
A 		4.9
(-3)
A 		30.7
(3)
A 		8.5
(-2.2)
A 		26
avr 22.1
(3) 		8
(-2.9) 		20.6
(2.4) 		7.8
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 4.5
(-2.6)
A 		15.8
(-0.9)
A 		28.3
(1.1)
A 		31.6
(1.6)
A 		40.5
(3)
P 		2.2
(-3)
A 		38
B 44.2
(-0.2)
A 		48.2
(1.1)
P 		40.6
(-1.3)
M 		35
(-3)
M 		54.4
(3)
P 		37
(-2.4)
P 		19
C 4.9
(-3)
A 		38
(2)
P 		11.3
(-2)
A 		23.9
(-0.1)
M 		20.1
(-0.7)
A 		44.7
(3)
P 		40
avr 17.9
(-3) 		34
(1.7) 		26.7
(-0.4) 		30.2
(0.6) 		38.3
(3) 		28
(-0) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175521_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20429
Sequence Type Exemplar sequence
Representative Public ID AV199512 NCBI
Target Description AV199512_rc /REP_DB=TREMBL Accession /GB=AV199512 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199512
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199512 AV199512_rc /REP_DB=TREMBL Accession /GB=AV199512 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk547e10 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170952 10/11 Negative Strand Matching Probes A 
SNAP00000013344 10/11 Negative Strand Matching Probes None
GENEFINDER00000013498 9/11 Negative Strand Matching Probes None
Y105E8A.20.1 11/11 Negative Strand Matching Probes None
Y105E8A.20.2 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14503019-14503294(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175521_AT
gaagaaacccgatcacaaaactgttttggagtcgattttgccgccagagctgcttggaaa
cttactaccgtgctcatcggttccaatcgagaattgtgcctgagctccggggtgtttcag
acgattccatcgatgtgccacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAAACCCGATCACAAAACTGTT 563 337 49 Antisense
CTGTTTTGGAGTCGATTTTGCCGCC 439 237 69 Antisense
TTTTGCCGCCAGAGCTGCTTGGAAA 116 679 84 Antisense
GCTGCTTGGAAACTTACTACCGTGC 306 293 97 Antisense
GGAAACTTACTACCGTGCTCATCGG 599 527 104 Antisense
TACTACCGTGCTCATCGGTTCCAAT 262 645 111 Antisense
CGGTTCCAATCGAGAATTGTGCCTG 481 241 126 Antisense
ATCGAGAATTGTGCCTGAGCTCCGG 448 35 134 Antisense
CTGAGCTCCGGGGTGTTTCAGACGA 253 239 148 Antisense
GGGTGTTTCAGACGATTCCATCGAT 48 499 158 Antisense
GACGATTCCATCGATGTGCCACGTC 144 379 168 Antisense
Sequence Source Affymetrix Proprietary Database