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[175519_at]

Description AU116503_rc /REP_DB=TREMBL Accession /GB=AU116503 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk745e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 91      6grp_total > 59      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 268
1 2 3 4 range
A 320
(3)
P 		151.3
(-3)
P 		181.2
(-1.9)
P 		258.1
(0.8)
P 		169
B 244.2
(-0.9)
P 		284.1
(-0)
P 		151.8
(-3)
P 		419.4
(3)
P 		268
C 408.5
(2.8)
P 		245.9
(-3)
P 		385.6
(2)
P 		413.1
(3)
P 		167
avr 324.2
(1.3) 		227.1
(-3) 		239.5
(-2.5) 		363.5
(3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 146.7
(-3)
P 		176.5
(-1.9)
P 		308.2
(3)
P 		180.3
(-1.8)
P 		258.1
(1.1)
P 		268.9
(1.5)
P 		162
B 391.1
(3)
P 		192
(-3)
P 		212.1
(-2.4)
P 		235.6
(-1.7)
P 		220
(-2.2)
P 		308.4
(0.5)
P 		199
C 286.6
(0.4)
P 		187.1
(-3)
P 		185.7
(-3)
P 		257.1
(-0.6)
P 		364.3
(3)
P 		324.7
(1.7)
P 		179
avr 274.8
(1.7) 		185.2
(-3) 		235.3
(-0.4) 		224.3
(-1) 		280.8
(2) 		300.7
(3) 		116
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 116.5
(3)
P 		32.8
(-3)
P 		47.4
(-2)
P 		37.8
(-2.6)
P 		84
B 77.9
(1.7)
P 		70.2
(0.9)
P 		35.2
(-3)
P 		89.4
(3)
P 		54
C 135.2
(3)
P 		70.7
(-2.9)
P 		134.4
(2.9)
P 		69.7
(-3)
P 		66
avr 109.9
(3) 		57.9
(-3) 		72.3
(-1.3) 		65.6
(-2.1) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 27
(-3)
P 		62.8
(1.2)
P 		67.1
(1.7)
P 		45.7
(-0.8)
P 		77.9
(3)
P 		65.5
(1.5)
P 		51
B 136.1
(3)
P 		63.9
(-2.1)
P 		51.5
(-3)
P 		62.4
(-2.2)
P 		89.4
(-0.3)
P 		115
(1.5)
P 		85
C 106.2
(2)
P 		57.1
(-2.2)
P 		47.3
(-3)
P 		51.7
(-2.6)
P 		117.9
(3)
P 		108.7
(2.2)
P 		71
avr 89.8
(2.1) 		61.3
(-1.9) 		55.3
(-2.7) 		53.3
(-3) 		95.1
(2.8) 		96.4
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20147
Sequence Type Exemplar sequence
Representative Public ID AU116503 NCBI
Target Description AU116503_rc /REP_DB=TREMBL Accession /GB=AU116503 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk745e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060355(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060355 NCBI Caenorhabditis elegans F59C6.11 (F59C6.11) mRNA, complete cds. 10/11 None
F59C6.11 ENSEMBL cdna:known chromosome:CEL140:I:10540788:10542594:1 gene:F59C6.11 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10542028-10542464(+) 82.04 100.0
Public Domain and Genome References
Gene Title
Ensembl F59C6.11
Entrez Gene 172935 Entrez gene
SwissProt Q95NH9 EMBL-EBI
WormBase CE27178 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42292 Hypothetical protein F59C6.11 [Caenorhabditis elegans] emb|CAC42309.1| Hypothetical protein F59C6.11 [Caenorhabditis elegans] ref|NP_492756.1| F59C6.11 [Caenorhabditis elegans] 3.0E-89
blast CAE58968 Hypothetical protein CBG02240 [Caenorhabditis briggsae] 9.0E-55
blast CAB01874 Hypothetical protein F59C6.3 [Caenorhabditis elegans] ref|NP_492754.1| F59C6.3 [Caenorhabditis elegans] 1.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492756.1 4 12-34,64-86,106-128,148-170
F59C6.11 4 12-34,64-86,106-128,148-170
Sequence
Target Sequence 
>C. ELEGANS:175519_AT
tctcattgcttatgccttctttgcaggagggtataacggagtaacaaatattaaactggt
tggagtggcaaggatttggatattgcttctggatggccgttgcctcatcaatattttcat
gttcagttgtaataatatccggtctgagctggtatcgtaataattagtctctcaatgttt
ttcaaattgctgaactcggaaatttatatactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCATTGCTTATGCCTTCTTTGCA 340 613 18 Antisense
GCTTATGCCTTCTTTGCAGGAGGGT 496 303 25 Antisense
GCAGGAGGGTATAACGGAGTAACAA 482 309 40 Antisense
AACTGGTTGGAGTGGCAAGGATTTG 411 143 71 Antisense
GATATTGCTTCTGGATGGCCGTTGC 247 427 96 Antisense
CATCAATATTTTCATGTTCAGTTGT 223 213 123 Antisense
GTTCAGTTGTAATAATATCCGGTCT 615 441 138 Antisense
TATCCGGTCTGAGCTGGTATCGTAA 123 657 153 Antisense
GGTATCGTAATAATTAGTCTCTCAA 514 505 168 Antisense
ATTAGTCTCTCAATGTTTTTCAAAT 418 13 180 Antisense
GCTGAACTCGGAAATTTATATACTT 240 297 206 Antisense
Sequence Source Affymetrix Proprietary Database