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[175518_s_at] gamma-soluble NSF attachment protein (SNAP-gamma)

Description AV175821_rc /REP_DB=TREMBL Accession /GB=AV175821 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk487c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 75      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 328
1 2 3 4 range
A 553.9
(3)
P 		320.8
(-2.5)
P 		300.2
(-3)
P 		404.4
(-0.5)
P 		254
B 461.6
(2.7)
P 		375.1
(0.4)
P 		244.2
(-3)
P 		473
(3)
P 		229
C 571.8
(3)
P 		304.7
(-3)
P 		393
(-1)
P 		469.2
(0.7)
P 		267
avr 529.1
(3) 		333.5
(-2.4) 		312.5
(-3) 		448.9
(0.8) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 396.7
(-3)
P 		472.3
(-0.7)
P 		596.9
(3)
P 		572.1
(2.3)
P 		410.6
(-2.6)
P 		456
(-1.2)
P 		200
B 478.4
(-3)
P 		569.5
(0.7)
P 		625.6
(3)
P 		490.3
(-2.5)
P 		563.3
(0.5)
P 		620.4
(2.8)
P 		147
C 474.8
(-2.2)
P 		654.1
(1.5)
P 		434.6
(-3)
P 		638
(1.2)
P 		461.8
(-2.4)
P 		724.6
(3)
P 		290
avr 450
(-3) 		565.3
(1.6) 		552.4
(1.1) 		566.8
(1.7) 		478.6
(-1.9) 		600.3
(3) 		150
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 201.7
(3)
P 		69.6
(-2.6)
P 		78.5
(-2.2)
P 		59.2
(-3)
P 		143
B 147.2
(3)
P 		92.6
(-0.6)
P 		56.6
(-3)
P 		100.8
(-0.1)
P 		91
C 189.3
(3)
P 		87.6
(-2.5)
P 		137
(0.2)
P 		79.1
(-3)
P 		110
avr 179.4
(3) 		83.3
(-2.8) 		90.7
(-2.3) 		79.7
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 73.1
(-3)
P 		168
(3)
P 		130
(0.6)
P 		145.1
(1.6)
P 		123.9
(0.2)
P 		111
(-0.6)
P 		95
B 166.5
(-0.8)
P 		189.6
(0.5)
P 		151.9
(-1.7)
P 		129.9
(-3)
P 		228.9
(2.9)
P 		231.3
(3)
P 		101
C 176
(-0)
P 		199.6
(1)
P 		110.6
(-3)
P 		128.3
(-2.2)
P 		149.4
(-1.2)
P 		242.6
(3)
P 		132
avr 138.5
(-2.3) 		185.7
(2.1) 		130.8
(-3) 		134.4
(-2.7) 		167.4
(0.4) 		195
(3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175518_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21854
Sequence Type Exemplar sequence
Representative Public ID AV175821 NCBI
Target Description AV175821_rc /REP_DB=TREMBL Accession /GB=AV175821 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk487c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075126 NCBI Caenorhabditis elegans Y59A8B.8 (Y59A8B.8) mRNA, complete cds. 11/11 A 
SNAP00000028702 ENSEMBL cdna:SNAP chromosome:CEL140:V:18050133:18068879:-1 11/11 None
GENEFINDER00000028710 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18056352:18057971:-1 11/11 None
GENEFINDER00000028717 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18064737:18068879:-1 11/11 None
Y59A8B.8 ENSEMBL cdna:known chromosome:CEL140:V:18056352:18068879:-1 gene:Y59A8B.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18064669-18065004(-) 90.49 100.0
chrV:18056284-18056619(-) 90.49 100.0
Public Domain and Genome References
Gene Title gamma-soluble NSF attachment protein (SNAP-gamma)
Ensembl Y59A8B.8
Entrez Gene 180182 Entrez gene
SwissProt Q9NEQ8 EMBL-EBI
WormBase CE24502 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15557_I_AT gamma-soluble NSF attachment protein / gamma-SNAP at
ATGENOME1:17986_S_AT gamma-soluble NSF attachment protein / gamma-SNAP at
ATH1-121501:254476_AT gamma-soluble NSF attachment protein / gamma-SNAP at
CANINE:1591566_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE:1587544_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE:1586063_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE_2:CFA.11056.1.S1_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE_2:CFA.4027.1.A1_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
CANINE_2:CFAAFFX.28628.1.S1_S_AT similar to Gamma-soluble NSF attachment protein (SNAP-gamma) (N-ethylmaleimide-sensitive factor attachment protein, gamma) cfa
DROSOPHILA_2:1632605_AT soluble NSF attachment protein dm
DROSGENOME1:142296_AT soluble NSF attachment protein dm
CHICKEN:GGA.12477.1.S1_AT N-ethylmaleimide-sensitive factor attachment protein, gamma gga
HG-U133_PLUS_2:210048_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U133A:210048_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-FOCUS:210048_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U133A_2:210048_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HUGENEFL:U78107_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
U133_X3P:G12804880_3P_X_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
U133_X3P:G12804880_3P_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U95D:74056_S_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U95D:74057_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HU35KSUBA:RC_AA485349_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HU35KSUBB:RC_R06228_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HU35KSUBB:RC_F10240_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
U133_X3P:HS.7181.0.S1_3P_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U133_PLUS_2:225448_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U133B:225448_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U95AV2:40289_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HG-U95B:46252_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
HU35KSUBA:AA258463_AT N-ethylmaleimide-sensitive factor attachment protein, gamma hs
MG-U74BV2:108061_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MG-U74BV2:163773_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOE430A:1424069_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430A_2:1424069_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430_2:1424069_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOE430A:1424070_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430A_2:1424070_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430_2:1424070_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOE430B:1443366_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOUSE430_2:1443366_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma mm
MOE430B:1443639_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MOUSE430_2:1443639_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBA:TC16201_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBA:TC20929_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBA:TC21531_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBB:TC34333_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
MU19KSUBC:TC36823_AT N-ethylmaleimide sensitive fusion protein attachment protein gamma, mRNA (cDNA clone MGC:38929 IMAGE:5362684) mm
RG-U34B:RC_AA956372_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34C:RC_AI071751_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAE230B:1384255_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAT230_2:1384255_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAE230A:1374075_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAT230_2:1374075_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAE230A:1376510_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAT230_2:1376510_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAE230B:1385659_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RAT230_2:1385659_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34B:RC_AA956596_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34B:RC_AI011548_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34C:RC_AI072079_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
RG-U34C:RC_AI175533_AT N-ethylmaleimide-sensitive factor attachment protein, gamma (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5783 endoplasmic reticulum inferred from electronic annotation QuickGO AmiGO
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5478 intracellular transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60957 Hypothetical protein Y59A8B.8 [Caenorhabditis elegans] ref|NP_507527.1| Y59A8B.8 [Caenorhabditis elegans] 1.0E-153
blast CAB60957 Hypothetical protein Y59A8B.8 [Caenorhabditis elegans] ref|NP_507527.1| Y59A8B.8 [Caenorhabditis elegans] 1.0E-142
blast CAB60957 Hypothetical protein Y59A8B.8 [Caenorhabditis elegans] ref|NP_507527.1| Y59A8B.8 [Caenorhabditis elegans] 1.0E-127
blast CAE61650 Hypothetical protein CBG05584 [Caenorhabditis briggsae] 1.0E-110
blast CAE61650 Hypothetical protein CBG05584 [Caenorhabditis briggsae] 1.0E-105
blast CAE61650 Hypothetical protein CBG05584 [Caenorhabditis briggsae] 3.0E-91
blast CAB60957 Hypothetical protein Y59A8B.8 [Caenorhabditis elegans] ref|NP_507527.1| Y59A8B.8 [Caenorhabditis elegans] 5.0E-61
blast NP_001002469 hypothetical protein LOC436742 [Danio rerio] gb|AAH76346.1| Hypothetical protein LOC436742 [Danio rerio] 3.0E-40
Sequence
Target Sequence 
>C. ELEGANS:175518_S_AT
ggacgtgtatgtgagaatcttatcggattctatgaggctggcgatgatgaaagtttccag
aatgtactgaaatgtggagccctacggtctatggacaatgagtatctccgagtgatgaaa
attctaaaagcaccgtctggaaatgcgggactcggtgacggacaagaagatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACGTGTATGTGAGAATCTTATCG 648 523 35 Antisense
CTTATCGGATTCTATGAGGCTGGCG 96 221 53 Antisense
GAGGCTGGCGATGATGAAAGTTTCC 255 405 68 Antisense
GAAAGTTTCCAGAATGTACTGAAAT 181 361 83 Antisense
ACTGAAATGTGGAGCCCTACGGTCT 109 93 100 Antisense
GGAGCCCTACGGTCTATGGACAATG 369 521 110 Antisense
GGACAATGAGTATCTCCGAGTGATG 193 527 127 Antisense
GAAAATTCTAAAAGCACCGTCTGGA 301 353 151 Antisense
AGCACCGTCTGGAAATGCGGGACTC 546 73 163 Antisense
AAATGCGGGACTCGGTGACGGACAA 431 117 175 Antisense
GGACTCGGTGACGGACAAGAAGATG 152 525 182 Antisense
Sequence Source Affymetrix Proprietary Database