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[175517_at]

Description AU115880_rc /REP_DB=TREMBL Accession /GB=AU115880 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 30      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 32      6grp_total > 41      4grp_total > 52      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1045
1 2 3 4 range
A 1094.6
(1.2)
P 		1383.2
(3)
P 		976.1
(0.4)
P 		438.7
(-3)
P 		945
B 1344.8
(3)
P 		1091.2
(1.5)
P 		1181.7
(2)
P 		338.1
(-3)
P 		1007
C 1332.9
(3)
P 		1098.9
(1.5)
P 		1061.8
(1.2)
P 		407.9
(-3)
P 		925
avr 1257.4
(3) 		1191.1
(2.5) 		1073.2
(1.7) 		394.9
(-3) 		863

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1197
1 2 3 4 5 6 range
A 1092.9
(-1.1)
P 		1214
(-0.5)
P 		1894.6
(3)
P 		1198.5
(-0.6)
P 		730.6
(-3)
P 		746.2
(-2.9)
P 		1164
B 1136.3
(-0.7)
P 		1260.7
(0.2)
P 		1686.8
(3)
P 		1113.2
(-0.8)
P 		784.3
(-3)
P 		1024.5
(-1.4)
P 		903
C 923.7
(-0.6)
P 		1262.8
(3)
P 		1138.7
(1.7)
P 		1171.2
(2)
P 		697.6
(-3)
P 		977.9
(-0)
P 		565
avr 1051
(-0.7) 		1245.8
(0.6) 		1573.4
(3) 		1161
(0) 		737.5
(-3) 		916.2
(-1.7) 		836
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 398.6
(3)
P 		300.2
(1.2)
P 		255.2
(0.4)
P 		64.2
(-3)
P 		334
B 428.8
(3)
P 		269.5
(0.3)
P 		273.8
(0.4)
P 		72.1
(-3)
P 		357
C 441.2
(3)
P 		315.9
(1)
P 		370.1
(1.9)
P 		68.8
(-3)
P 		372
avr 422.9
(3) 		295.2
(0.8) 		299.7
(0.9) 		68.4
(-3) 		355

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 201.5
(-2.5)
P 		431.8
(3)
P 		412.6
(2.5)
P 		304
(-0.1)
P 		220.5
(-2.1)
P 		181.7
(-3)
P 		250
B 395.4
(1.8)
P 		419.6
(3)
P 		409.6
(2.5)
P 		294.8
(-3)
P 		318.6
(-1.9)
P 		382
(1.2)
P 		125
C 342.4
(1.4)
P 		385.3
(3)
P 		289.8
(-0.6)
P 		235.5
(-2.6)
P 		225.7
(-3)
P 		327.3
(0.8)
P 		160
avr 313.1
(-0.8) 		412.2
(3) 		370.7
(1.4) 		278.1
(-2.1) 		254.9
(-3) 		297
(-1.4) 		157
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20168
Sequence Type Exemplar sequence
Representative Public ID AU115880 NCBI
Target Description AU115880_rc /REP_DB=TREMBL Accession /GB=AU115880 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059622 NCBI Caenorhabditis elegans K07G5.6 (K07G5.6) mRNA, complete cds. 11/11 None
K07G5.6.1 ENSEMBL cdna:known chromosome:CEL140:I:7158083:7159973:-1 gene:K07G5.6 11/11 None
K07G5.6.2 ENSEMBL cdna:known chromosome:CEL140:I:7158083:7160002:-1 gene:K07G5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7158065-7158763(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07G5.6
Entrez Gene 172454 Entrez gene
SwissProt Q9BHB8 EMBL-EBI
WormBase CE26899 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6783 heme biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4325 ferrochelatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35821 Hypothetical protein K07G5.6 [Caenorhabditis elegans] emb|CAC35820.1| Hypothetical protein K07G5.6 [Caenorhabditis elegans] ref|NP_492023.1| K07G5.6 [Caenorhabditis elegans] 0.0
blast CAE73082 Hypothetical protein CBG20458 [Caenorhabditis briggsae] 1.0E-145
blast CAE73124 Hypothetical protein CBG20506 [Caenorhabditis briggsae] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:175517_AT
gaatctggaaaagtggccgttgtaccaattacagatgttatcgaaactttcaacacactt
tatacattaccaaaaaaggttgaacacttgaaaaacgcactagtccttcgacccgattat
gaatccgatcatctgacacatggaatatcggagatcgtcaaaaatctattgctcggacgg
aaggatcaacaattggaagtggcctgctcaacgagacagttgcagaatctcaacata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCTGGAAAAGTGGCCGTTGTAC 503 327 17 Antisense
GTGGCCGTTGTACCAATTACAGATG 406 491 29 Antisense
GATGTTATCGAAACTTTCAACACAC 456 409 50 Antisense
TTCAACACACTTTATACATTACCAA 84 685 65 Antisense
TGAAAAACGCACTAGTCCTTCGACC 563 571 105 Antisense
GTCCTTCGACCCGATTATGAATCCG 45 477 119 Antisense
GAATCCGATCATCTGACACATGGAA 96 331 137 Antisense
AATCTATTGCTCGGACGGAAGGATC 202 169 179 Antisense
ACAATTGGAAGTGGCCTGCTCAACG 349 115 205 Antisense
GTGGCCTGCTCAACGAGACAGTTGC 141 493 215 Antisense
GAGACAGTTGCAGAATCTCAACATA 371 393 229 Antisense
Sequence Source Affymetrix Proprietary Database