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[175516_s_at]

Description AV177131_rc /REP_DB=TREMBL Accession /GB=AV177131 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk524a12 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 37      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 42.2
(3)
A 		6.6
(-3)
A 		7.7
(-2.8)
A 		32.6
(1.4)
A 		36
B 9.6
(-2.7)
A 		55.3
(3)
A 		7.9
(-2.9)
A 		7.4
(-3)
A 		48
C 69.4
(3)
A 		11.7
(-2.5)
A 		6.7
(-3)
A 		42.4
(0.4)
A 		63
avr 40.4
(3) 		24.5
(0.1) 		7.4
(-3) 		27.5
(0.7) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 55.2
(2.4)
A 		5.8
(-3)
A 		22.1
(-1.2)
A 		45.5
(1.4)
A 		60.4
(3)
A 		36.5
(0.4)
A 		55
B 21.3
(2.2)
A 		5.8
(-3)
A 		12.2
(-0.9)
A 		6.8
(-2.7)
A 		23.7
(3)
A 		7
(-2.6)
A 		18
C 4.8
(-3)
A 		18.3
(-0.4)
A 		4.7
(-3)
A 		6.6
(-2.6)
A 		7.9
(-2.4)
A 		36.2
(3)
A 		32
avr 27.1
(2) 		10
(-3) 		13
(-2.1) 		19.6
(-0.2) 		30.7
(3) 		26.6
(1.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 15.4
(3)
A 		1.4
(-3)
A 		2
(-2.7)
A 		4.8
(-1.5)
A 		14
B 3.1
(-2.3)
A 		13.6
(3)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		12
C 23
(3)
A 		3.4
(-2.7)
A 		2.3
(-3)
A 		7.1
(-1.6)
A 		21
avr 13.8
(3) 		6.1
(-0.9) 		2
(-3) 		4.5
(-1.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.2
(0)
A 		2.1
(-3)
A 		4.8
(-2)
A 		11.5
(0.5)
A 		18.2
(3)
A 		8.9
(-0.5)
A 		16
B 7.4
(1.3)
A 		1.9
(-2.9)
A 		3
(-2.1)
A 		1.8
(-3)
A 		9.6
(3)
A 		2.6
(-2.4)
A 		8
C 1.8
(-2.7)
A 		5.6
(-0.6)
A 		1.2
(-3)
A 		1.3
(-2.9)
A 		2.6
(-2.2)
A 		12.1
(3)
A 		11
avr 6.5
(-0) 		3.2
(-2.8) 		3
(-3) 		4.9
(-1.4) 		10.1
(3) 		7.9
(1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175516_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20825
Sequence Type Exemplar sequence
Representative Public ID AV177131 NCBI
Target Description AV177131_rc /REP_DB=TREMBL Accession /GB=AV177131 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk524a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000007037 ENSEMBL cdna:SNAP chromosome:CEL140:II:3725948:3726670:-1 11/11 None
GENEFINDER00000007043 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3725948:3727428:-1 11/11 None
C46E10.8 ENSEMBL cdna:known chromosome:CEL140:II:3725900:3727428:-1 gene:C46E10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3725908-3726394(-) 100.0 100.0
Public Domain and Genome References
Ensembl C46E10.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96685 Hypothetical protein C46E10.8 [Caenorhabditis elegans] ref|NP_494632.1| C46E10.8 [Caenorhabditis elegans] 1.0E-66
blast H88108 protein C46E10.8 [imported] - Caenorhabditis elegans 5.0E-63
blast AAB96685 Hypothetical protein C46E10.8 [Caenorhabditis elegans] ref|NP_494632.1| C46E10.8 [Caenorhabditis elegans] 8.0E-63
blast H88108 protein C46E10.8 [imported] - Caenorhabditis elegans 1.0E-62
blast H88108 protein C46E10.8 [imported] - Caenorhabditis elegans 3.0E-27
blast AAK18925 Hypothetical protein F12E12.5 [Caenorhabditis elegans] ref|NP_494634.1| F12E12.5 [Caenorhabditis elegans] 5.0E-13
blast AAK18925 Hypothetical protein F12E12.5 [Caenorhabditis elegans] ref|NP_494634.1| F12E12.5 [Caenorhabditis elegans] 4.0E-12
blast XP_609737 PREDICTED: similar to zinc finger protein, subfamily 1A, 5 [Bos taurus] 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 5.7E-5
Sequence
Target Sequence 
>C. ELEGANS:175516_S_AT
gaatgcgagcattgtgaaattgagttcaaagacgctgtgctgggccagctccacaccagt
ttccacacgatcggcaacccatttcagtgctcactttgtggagcacaatgctacaatgag
tacgccttcaacatgcatcttgtccaatccagtcacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCGAGCATTGTGAAATTGAGT 126 331 93 Antisense
TCAAAGACGCTGTGCTGGGCCAGCT 335 629 118 Antisense
CAACCCATTTCAGTGCTCACTTTGT 610 187 167 Antisense
CCATTTCAGTGCTCACTTTGTGGAG 143 271 171 Antisense
GCTCACTTTGTGGAGCACAATGCTA 570 301 181 Antisense
GCACAATGCTACAATGAGTACGCCT 507 317 195 Antisense
GCTACAATGAGTACGCCTTCAACAT 543 301 202 Antisense
ATGAGTACGCCTTCAACATGCATCT 611 45 208 Antisense
GCCTTCAACATGCATCTTGTCCAAT 693 281 216 Antisense
AACATGCATCTTGTCCAATCCAGTC 600 137 222 Antisense
CATCTTGTCCAATCCAGTCACAATT 3 213 228 Antisense
Sequence Source Affymetrix Proprietary Database