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[175515_at]

Description AV175811_rc /REP_DB=TREMBL Accession /GB=AV175811 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk487b11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 70      6grp_total > 32      4grp_total > 13      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 200.2
(-0.3)
P 		141.8
(-3)
P 		186.3
(-0.9)
P 		270.3
(3)
P 		129
B 200.2
(-1.8)
P 		186
(-3)
P 		234.9
(1.1)
P 		258
(3)
P 		72
C 282.8
(3)
P 		249.1
(1.7)
P 		132.2
(-3)
P 		266
(2.3)
P 		151
avr 227.7
(0.2) 		192.3
(-2.4) 		184.5
(-3) 		264.8
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 319.2
(0.4)
P 		258
(-0.9)
P 		441.7
(3)
P 		216.7
(-1.8)
P 		161.5
(-3)
P 		161.6
(-3)
P 		280
B 316.1
(1.2)
P 		280.5
(0.3)
P 		382.1
(3)
P 		263.1
(-0.2)
P 		160
(-3)
P 		210.7
(-1.6)
P 		222
C 216.9
(-1.6)
P 		419.2
(3)
P 		289.6
(0)
P 		219.7
(-1.6)
P 		156.3
(-3)
P 		183.2
(-2.4)
P 		263
avr 284.1
(0.5) 		319.2
(1.5) 		371.1
(3) 		233.2
(-0.9) 		159.3
(-3) 		185.2
(-2.3) 		212
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 72.9
(3)
P 		30.8
(-3)
P 		48.7
(-0.4)
P 		39.6
(-1.7)
P 		42
B 63.9
(3)
P 		45.9
(-3)
P 		54.4
(-0.2)
P 		55
(0)
P 		18
C 93.6
(3)
P 		71.6
(0.3)
P 		46.1
(-2.9)
P 		44.9
(-3)
P 		49
avr 76.8
(3) 		49.4
(-2.4) 		49.7
(-2.4) 		46.5
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 58.8
(-0.9)
P 		91.8
(2.5)
P 		96.2
(3)
P 		54.9
(-1.4)
P 		48.7
(-2)
P 		39.3
(-3)
P 		57
B 110
(3)
P 		93.4
(0.8)
P 		92.8
(0.7)
P 		69.7
(-2.4)
P 		65
(-3)
P 		78.6
(-1.2)
P 		45
C 80.4
(-0.4)
P 		127.9
(3)
P 		73.7
(-0.9)
P 		44.2
(-3)
P 		50.6
(-2.5)
P 		61.3
(-1.8)
P 		84
avr 83.1
(0.4) 		104.4
(3) 		87.6
(1) 		56.3
(-2.8) 		54.8
(-3) 		59.7
(-2.4) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21888
Sequence Type Exemplar sequence
Representative Public ID AV175811 NCBI
Target Description AV175811_rc /REP_DB=TREMBL Accession /GB=AV175811 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk487b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T22G5.3 ENSEMBL cdna:known chromosome:CEL140:V:13883505:13886650:1 gene:T22G5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016895 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13886360-13886640(+) 100.0 100.0
Public Domain and Genome References
Ensembl T22G5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03388 Hypothetical protein T22G5.3 [Caenorhabditis elegans] ref|NP_506441.1| T22G5.3 [Caenorhabditis elegans] 0.0
blast CAE66213 Hypothetical protein CBG11455 [Caenorhabditis briggsae] 3.0E-65
Sequence
Target Sequence 
>C. ELEGANS:175515_AT
ccccttcatcctttgagatcttgtttggaataaggaatgaaacatcactgggtccactga
ttacaagaagtgataatcgaatggcgacaattattttggataaaaaatgtgtgaagttct
cgctttggaacaagtgatgtccgggcacatgtcgattccacattcctcgattctcgacat
tccccgacagagattcctcgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCTTCATCCTTTGAGATCTTGTT 475 261 26 Antisense
CATCCTTTGAGATCTTGTTTGGAAT 582 211 32 Antisense
GAATGAAACATCACTGGGTCCACTG 334 331 60 Antisense
CACTGGGTCCACTGATTACAAGAAG 547 195 71 Antisense
AATCGAATGGCGACAATTATTTTGG 420 147 100 Antisense
AAATGTGTGAAGTTCTCGCTTTGGA 88 121 130 Antisense
GAAGTTCTCGCTTTGGAACAAGTGA 513 337 138 Antisense
GGAACAAGTGATGTCCGGGCACATG 200 529 152 Antisense
AGTGATGTCCGGGCACATGTCGATT 406 59 158 Antisense
TCTCGACATTCCCCGACAGAGATTC 298 611 197 Antisense
TTCCCCGACAGAGATTCCTCGAGAA 574 697 205 Antisense
Sequence Source Affymetrix Proprietary Database