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[175514_at] ser/thr-protein kinase

Description AU113843_rc /REP_DB=TREMBL Accession /GB=AU113843 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk712c12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 87      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_total > 87      4grp_total > 25      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 56.4
(-3)
P 		63.5
(-2.4)
P 		70.3
(-1.9)
P 		130.2
(3)
P 		74
B 46.3
(-3)
P 		96.1
(3)
P 		59.4
(-1.4)
P 		75.4
(0.5)
P 		50
C 58.4
(-3)
P 		77.7
(1)
P 		87.5
(3)
P 		59.2
(-2.8)
P 		29
avr 53.7
(-3) 		79.1
(1.4) 		72.4
(0.2) 		88.3
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 30.5
(-3)
A 		46.1
(-2.7)
P 		84.2
(-2)
P 		77.9
(-2.1)
P 		176
(-0.4)
P 		361.9
(3)
P 		331
B 47.6
(-3)
P 		62.5
(-2.7)
P 		76.2
(-2.5)
P 		118
(-1.6)
P 		148.8
(-1.1)
P 		359.8
(3)
P 		312
C 55.2
(-3)
P 		76.1
(-2.5)
P 		57
(-3)
A 		92.4
(-2.2)
P 		210.7
(0.4)
P 		326
(3)
P 		271
avr 44.4
(-3) 		61.6
(-2.7) 		72.5
(-2.4) 		96.1
(-2) 		178.5
(-0.4) 		349.2
(3) 		305
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 20.5
(3)
P 		13.8
(-3)
P 		18.4
(1.1)
P 		19.1
(1.7)
P 		7
B 14.8
(-2.4)
P 		23.7
(3)
P 		13.8
(-3)
P 		16.1
(-1.6)
P 		10
C 19.3
(-0.3)
P 		22.3
(0.6)
P 		30.5
(3)
P 		10
(-3)
P 		21
avr 18.2
(0.2) 		19.9
(2) 		20.9
(3) 		15.1
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 5.6
(-3)
A 		16.4
(-2.2)
P 		18.3
(-2.1)
P 		19.8
(-2)
P 		53.1
(0.5)
P 		88.1
(3)
P 		83
B 16.6
(-3)
P 		20.8
(-2.8)
P 		18.5
(-2.9)
P 		31.3
(-2.3)
P 		60.5
(-0.8)
P 		134.2
(3)
P 		118
C 20.5
(-2.6)
P 		23.2
(-2.4)
P 		14.5
(-3)
A 		18.6
(-2.7)
P 		68.2
(0.4)
P 		109.1
(3)
P 		95
avr 14.2
(-3) 		20.1
(-2.6) 		17.1
(-2.8) 		23.2
(-2.4) 		60.6
(-0.1) 		110.5
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20415
Sequence Type Exemplar sequence
Representative Public ID AU113843 NCBI
Target Description AU113843_rc /REP_DB=TREMBL Accession /GB=AU113843 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk712c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059304 NCBI Caenorhabditis elegans C34G6.5 (C34G6.5) mRNA, complete cds. 11/11 A 
C34G6.5 ENSEMBL cdna:known chromosome:CEL140:I:5880310:5882418:1 gene:C34G6.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014373 1/11 Cross Hyb Matching Probes None
GENEFINDER00000014384 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5882083-5882404(+) 98.57 98.57
Public Domain and Genome References
Gene Title ser/thr-protein kinase
Ensembl C34G6.5
Entrez Gene 172260 Entrez gene
SwissProt O01493 EMBL-EBI
WormBase CE26909 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52478 Hypothetical protein C34G6.5 [Caenorhabditis elegans] ref|NP_491705.1| C34G6.5 [Caenorhabditis elegans] 0.0
blast CAE60410 Hypothetical protein CBG04016 [Caenorhabditis briggsae] 1.0E-167
blast CAD25731 CELL CYCLE PROTEIN KINASE OF THE CDC7 SUBFAMILY [Encephalitozoon cuniculi GB-M1] ref|NP_586127.1| CELL CYCLE PROTEIN KINASE OF THE CDC7 SUBFAMILY [Encephalitozoon cuniculi GB-M1] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 8.8E-32
Pfam IPR000719 EMBL-EBI Protein kinase 0.093
Sequence
Target Sequence 
>C. ELEGANS:175514_AT
accgtacacttgaggctgatagattcaagcgatacaacgccgatcaactgctctgcctca
ttgaatcttacgataaacgtgtgaaattcaaaccgaaaccaatgtcgaatcaagatccat
tctaaattaaaatgccatcaaatacttacattactcttactccgaatttttctcgcttgc
tgtgttgtattgttctgtagattcggatatttctcaatcgagtctgaataattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGTACACTTGAGGCTGATAGATT 704 87 28 Antisense
ATTAAAATGCCATCAAATACTTACA 141 11 153 Antisense
AATACTTACATTACTCTTACTCCGA 64 173 168 Antisense
CATTACTCTTACTCCGAATTTTTCT 524 213 176 Antisense
TTACTCCGAATTTTTCTCGCTTGCT 51 683 184 Antisense
GAATTTTTCTCGCTTGCTGTGTTGT 435 325 191 Antisense
TTCTCGCTTGCTGTGTTGTATTGTT 466 693 197 Antisense
GCTTGCTGTGTTGTATTGTTCTGTA 384 307 202 Antisense
GTTGTATTGTTCTGTAGATTCGGAT 507 437 211 Antisense
GATTCGGATATTTCTCAATCGAGTC 599 431 227 Antisense
TTCTCAATCGAGTCTGAATAATTCT 361 689 238 Antisense
Sequence Source Affymetrix Proprietary Database