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[175513_at]

Description AV184279_rc /REP_DB=TREMBL Accession /GB=AV184279 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662d11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 05      4grp_highest_8_8 > 58      4grp_high_8_8 > 26      6grp_total > 05      4grp_total > 37      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 220.1
(3)
P 		132.8
(-1.8)
P 		129.3
(-2)
P 		111.6
(-3)
P 		109
B 224.1
(3)
P 		159.4
(-1)
P 		125.9
(-3)
P 		150.1
(-1.5)
P 		98
C 228.2
(3)
P 		219.2
(2.6)
P 		105.1
(-3)
P 		195.9
(1.4)
P 		123
avr 224.1
(3) 		170.5
(-0.1) 		120.1
(-3) 		152.5
(-1.1) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 330.2
(3)
P 		231.5
(0.7)
P 		177.6
(-0.6)
P 		170.7
(-0.7)
P 		132.4
(-1.6)
P 		73.3
(-3)
M 		257
B 299.3
(3)
P 		197.9
(-0.6)
P 		129.3
(-3)
P 		180.2
(-1.2)
P 		211
(-0.1)
P 		160.8
(-1.9)
P 		170
C 240.1
(1.5)
P 		293.7
(3)
P 		190.8
(0.2)
P 		139.6
(-1.2)
P 		122.1
(-1.7)
P 		75.7
(-3)
P 		218
avr 289.9
(3) 		241
(1.4) 		165.9
(-1) 		163.5
(-1.1) 		155.2
(-1.3) 		103.3
(-3) 		187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 80.1
(3)
P 		28.8
(-1.8)
P 		33.8
(-1.4)
P 		16.3
(-3)
P 		64
B 71.5
(3)
P 		39.4
(-1.6)
P 		29.2
(-3)
P 		32
(-2.6)
P 		42
C 75.5
(3)
P 		63
(1.2)
P 		36.6
(-2.5)
P 		33
(-3)
P 		43
avr 75.7
(3) 		43.7
(-1) 		33.2
(-2.2) 		27.1
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 60.9
(1)
P 		82.3
(3)
P 		38.7
(-1.1)
P 		43.3
(-0.6)
P 		39.9
(-0.9)
P 		17.8
(-3)
M 		65
B 104.1
(3)
P 		65.9
(-0.2)
P 		31.4
(-3)
P 		47.7
(-1.7)
P 		85.7
(1.5)
P 		60
(-0.6)
P 		73
C 89
(2.9)
P 		89.6
(3)
P 		48.5
(-0.8)
P 		28.1
(-2.7)
P 		39.5
(-1.7)
P 		25.3
(-3)
P 		64
avr 84.7
(3) 		79.3
(2.4) 		39.5
(-2.4) 		39.7
(-2.4) 		55
(-0.5) 		34.4
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175513_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20135
Sequence Type Exemplar sequence
Representative Public ID AV184279 NCBI
Target Description AV184279_rc /REP_DB=TREMBL Accession /GB=AV184279 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F37D6.6 ENSEMBL cdna:known chromosome:CEL140:I:10509721:10514010:1 gene:F37D6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10513626-10513931(+) 100.0 100.0
Public Domain and Genome References
Ensembl F37D6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70221 Hypothetical protein F37D6.6 [Caenorhabditis elegans] emb|CAB70215.2| Hypothetical protein F37D6.6 [Caenorhabditis elegans] ref|NP_492746.2| Temporarily Assigned Gene name family member (tag-68) [Caenorhabditis elegans] 0.0
blast CAE58961 Hypothetical protein CBG02231 [Caenorhabditis briggsae] 0.0
blast T21920 hypothetical protein F37D6.7 - Caenorhabditis elegans 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR003619 EMBL-EBI Dwarfin protein, domain A 1.8E-5
Sequence
Target Sequence 
>C. ELEGANS:175513_AT
atctccaaaaaagttcacacaccaacaaaaataaaaccaaaaaagaggctttcaaaatat
aattttttaggtttttctcttaattgcgcatgagtacgggttgattatccttcttctctc
tttataaaatagccaattttgtttttccccacgatttccagaattcaaaaccaaaaccaa
aacattctcaaatccccgacgaaccgatctttcccatcccaagaaatacccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCCAAAAAAGTTCACACACCAA 246 33 30 Antisense
TCACACACCAACAAAAATAAAACCA 106 629 44 Antisense
TAGGTTTTTCTCTTAATTGCGCATG 48 653 97 Antisense
AATTGCGCATGAGTACGGGTTGATT 169 179 111 Antisense
GTACGGGTTGATTATCCTTCTTCTC 148 459 123 Antisense
ATCCTTCTTCTCTCTTTATAAAATA 310 39 136 Antisense
TCTTCTCTCTTTATAAAATAGCCAA 403 617 141 Antisense
TTTTCCCCACGATTTCCAGAATTCA 607 677 172 Antisense
CCACGATTTCCAGAATTCAAAACCA 75 275 178 Antisense
GATCTTTCCCATCCCAAGAAATACC 277 419 235 Antisense
TCTTTCCCATCCCAAGAAATACCCG 258 605 237 Antisense
Sequence Source Affymetrix Proprietary Database