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[175510_at]

Description AV178930_rc /REP_DB=TREMBL Accession /GB=AV178930 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk585c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 01      6grp_total > 27      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5157
1 2 3 4 range
A 3532.9
(0.5)
P 		2034.6
(-1.5)
P 		901.2
(-3)
P 		5442.7
(3)
P 		4542
B 3171.4
(-0.5)
P 		1729.2
(-2.2)
P 		1099.5
(-3)
P 		6058.1
(3)
P 		4959
C 3365.7
(1.4)
P 		1741.9
(-1.8)
P 		1103.9
(-3)
P 		4185.3
(3)
P 		3081
avr 3356.7
(0.3) 		1835.2
(-1.9) 		1034.9
(-3) 		5228.7
(3) 		4194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1963
1 2 3 4 5 6 range
A 2976.4
(3)
P 		2086.7
(-0.2)
P 		1378.7
(-2.8)
P 		1312.4
(-3)
P 		1851.6
(-1.1)
P 		1803.2
(-1.2)
P 		1664
B 3096.7
(3)
P 		2364.4
(0.8)
P 		1133.5
(-3)
P 		1649.6
(-1.4)
P 		1428.9
(-2.1)
P 		1885.8
(-0.7)
P 		1963
C 2742.4
(3)
P 		1924.7
(-0.6)
P 		1386.8
(-3)
P 		1522.1
(-2.4)
P 		1537.7
(-2.3)
P 		1615
(-2)
P 		1356
avr 2938.5
(3) 		2125.3
(0) 		1299.7
(-3) 		1494.7
(-2.3) 		1606.1
(-1.9) 		1768
(-1.3) 		1639
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1055
1 2 3 4 range
A 1286.3
(3)
P 		441.7
(-1.8)
P 		235.6
(-3)
P 		796.7
(0.2)
P 		1051
B 1011.3
(1.4)
P 		427.1
(-2)
P 		254.8
(-3)
P 		1291
(3)
P 		1036
C 1114.2
(3)
P 		500.8
(-2)
P 		384.7
(-3)
P 		705.7
(-0.4)
P 		730
avr 1137.3
(3) 		456.5
(-1.8) 		291.7
(-3) 		931.1
(1.5) 		846

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 802
1 2 3 4 5 6 range
A 548.7
(0.4)
P 		742.1
(3)
P 		300.2
(-3)
P 		332.9
(-2.6)
P 		558.7
(0.5)
P 		439
(-1.1)
P 		442
B 1077.5
(3)
P 		787
(0.8)
P 		275.3
(-3)
P 		436.9
(-1.8)
P 		580.5
(-0.7)
P 		703.2
(0.2)
P 		802
C 1016.5
(3)
P 		587.3
(-0.6)
P 		353
(-2.6)
P 		306.1
(-3)
P 		497.6
(-1.4)
P 		540.6
(-1)
P 		710
avr 880.9
(3) 		705.5
(1.2) 		309.5
(-3) 		358.6
(-2.5) 		545.6
(-0.5) 		560.9
(-0.4) 		571
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22291
Sequence Type Exemplar sequence
Representative Public ID AV178930 NCBI
Target Description AV178930_rc /REP_DB=TREMBL Accession /GB=AV178930 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk585c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078011 NCBI Caenorhabditis elegans M163.1 (M163.1) mRNA, complete cds. 11/11 None
M163.1 ENSEMBL cdna:known chromosome:CEL140:X:14502417:14503743:-1 gene:M163.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14502484-14502764(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M163.1
Entrez Gene 181546 Entrez gene
SwissProt Q93906 EMBL-EBI
WormBase CE12446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01897 Hypothetical protein M163.1 [Caenorhabditis elegans] ref|NP_510412.1| M163.1 [Caenorhabditis elegans] 7.0E-71
blast CAE63162 Hypothetical protein CBG07479 [Caenorhabditis briggsae] 5.0E-20
Sequence
Target Sequence 
>C. ELEGANS:175510_AT
gaatcacctcacattaccataatcattgcacattgaatagctcgtttcacacaaaccaca
atcttgggtcgcttctttttctccttatttcttccacttttcacaccccttaattgaata
tgatatttttttatgaccatgagatacatacacttccgcatagtttctacgatgataact
ttttgtgattagcattttgtatagatgtccatttctcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCACCTCACATTACCATAATCA 402 327 38 Antisense
ACATTACCATAATCATTGCACATTG 384 105 48 Antisense
GCACATTGAATAGCTCGTTTCACAC 299 317 65 Antisense
GTTTCACACAAACCACAATCTTGGG 697 449 81 Antisense
ACCACAATCTTGGGTCGCTTCTTTT 208 85 92 Antisense
CACTTTTCACACCCCTTAATTGAAT 569 99 132 Antisense
GACCATGAGATACATACACTTCCGC 509 383 172 Antisense
TACACTTCCGCATAGTTTCTACGAT 302 643 186 Antisense
TTTCTACGATGATAACTTTTTGTGA 76 673 201 Antisense
AACTTTTTGTGATTAGCATTTTGTA 523 139 214 Antisense
TTTGTATAGATGTCCATTTCTCCCC 214 667 233 Antisense
Sequence Source Affymetrix Proprietary Database