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[175509_s_at]

Description AV184170_rc /REP_DB=TREMBL Accession /GB=AV184170 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk661a12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 695
1 2 3 4 range
A 310.9
(-2.8)
P 		497.1
(-0.8)
P 		297.2
(-3)
P 		843.3
(3)
P 		546
B 321.1
(-3)
P 		346.3
(-2.7)
P 		396.2
(-2.1)
P 		805.5
(3)
P 		484
C 239.8
(-3)
P 		366.5
(-1.9)
P 		377.2
(-1.8)
P 		934.3
(3)
P 		695
avr 290.6
(-3) 		403.3
(-1.8) 		356.9
(-2.3) 		861
(3) 		570

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1234
1 2 3 4 5 6 range
A 319.2
(-2.7)
P 		273.7
(-3)
P 		342.3
(-2.6)
P 		480.8
(-1.8)
P 		559.4
(-1.4)
P 		1323.7
(3)
P 		1050
B 324.9
(-2.7)
P 		287.3
(-3)
P 		345.8
(-2.6)
P 		295.7
(-2.9)
P 		655.2
(-0.3)
P 		1094.5
(3)
P 		807
C 228.9
(-3)
P 		250.2
(-2.9)
P 		268.9
(-2.8)
P 		566.8
(-1.4)
P 		603.6
(-1.2)
P 		1462.9
(3)
P 		1234
avr 291
(-2.9) 		270.4
(-3) 		319
(-2.7) 		447.8
(-2) 		606.1
(-1) 		1293.7
(3) 		1023
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 113.2
(1.7)
P 		107.9
(1)
P 		77.7
(-3)
P 		123.4
(3)
P 		46
B 102.4
(-1.8)
P 		85.5
(-3)
P 		91.8
(-2.6)
P 		171.6
(3)
P 		86
C 79.4
(-3)
P 		105.4
(-1)
P 		131.5
(1)
P 		157.5
(3)
P 		78
avr 98.3
(-3) 		99.6
(-2.9) 		100.3
(-2.8) 		150.8
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 431
1 2 3 4 5 6 range
A 58.8
(-3)
P 		97.3
(-2.1)
P 		74.5
(-2.6)
P 		122
(-1.6)
P 		168.8
(-0.5)
P 		322.3
(3)
P 		264
B 113
(-2.4)
P 		95.6
(-2.7)
P 		84
(-2.9)
P 		78.3
(-3)
P 		266.2
(0.4)
P 		408.1
(3)
P 		330
C 84.9
(-2.8)
P 		76.3
(-2.9)
P 		68.4
(-3)
P 		114
(-2.4)
P 		195.3
(-1.2)
P 		489.7
(3)
P 		421
avr 85.6
(-2.8) 		89.7
(-2.7) 		75.6
(-3) 		104.8
(-2.5) 		210.1
(-0.6) 		406.7
(3) 		331
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175509_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20325
Sequence Type Exemplar sequence
Representative Public ID AV184170 NCBI
Target Description AV184170_rc /REP_DB=TREMBL Accession /GB=AV184170 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk661a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058972(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058972 NCBI Caenorhabditis elegans C41D11.5 (C41D11.5) mRNA, complete cds. 11/11 None
SNAP00000002070 ENSEMBL cdna:SNAP chromosome:CEL140:I:4449999:4450924:-1 11/11 None
GENEFINDER00000002082 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4449999:4450921:-1 11/11 None
C41D11.5 ENSEMBL cdna:known chromosome:CEL140:I:4449940:4450926:-1 gene:C41D11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4449949-4450280(-) 87.5 100.0
Public Domain and Genome References
Gene Title
Ensembl C41D11.5
Entrez Gene 172046 Entrez gene
SwissProt O01975 EMBL-EBI
WormBase CE27841 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68240 Hypothetical protein C41D11.5 [Caenorhabditis elegans] ref|NP_491373.1| C41D11.5 [Caenorhabditis elegans] sp|O01975|YJ05_CAEEL Hypothetical protein C41D11.5 1.0E-125
blast T28787 hypothetical protein C41D11.5 - Caenorhabditis elegans 1.0E-118
blast CAE60398 Hypothetical protein CBG04000 [Caenorhabditis briggsae] 7.0E-86
Sequence
Target Sequence 
>C. ELEGANS:175509_S_AT
gaatcatcggctttttgtctttatcaaaggatccgaggatatggtcaacgaggaaattga
agaggaagaccctccattcggctcaaagcaatcgttccactactcattcatccacgaaaa
atgcaattgcgatggggttccagcaccaagaaatgatggaaaatggctcagaatggtgcc
atacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATCGGCTTTTTGTCTTTATC 457 327 39 Antisense
TTGTCTTTATCAAAGGATCCGAGGA 539 701 53 Antisense
GGATCCGAGGATATGGTCAACGAGG 325 511 67 Antisense
CCCTCCATTCGGCTCAAAGCAATCG 91 259 108 Antisense
TCAAAGCAATCGTTCCACTACTCAT 470 629 121 Antisense
TCCACTACTCATTCATCCACGAAAA 383 589 134 Antisense
TCATCCACGAAAAATGCAATTGCGA 57 623 146 Antisense
GCAATTGCGATGGGGTTCCAGCACC 428 323 161 Antisense
TTGCGATGGGGTTCCAGCACCAAGA 18 703 165 Antisense
GGGGTTCCAGCACCAAGAAATGATG 601 495 172 Antisense
AATGGCTCAGAATGGTGCCATACAT 91 163 200 Antisense
Sequence Source Affymetrix Proprietary Database