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[175508_at]

Description AU115977_rc /REP_DB=TREMBL Accession /GB=AU115977 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk739b11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 76      6grp_total > 09      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 988
1 2 3 4 range
A 1366.7
(2.6)
P 		772.9
(-2)
P 		636.1
(-3)
P 		1419.3
(3)
P 		783
B 1623.8
(3)
P 		735.7
(-2.9)
P 		727.6
(-3)
P 		1341
(1.1)
P 		896
C 1345.3
(3)
P 		883.9
(-3)
P 		890.4
(-2.9)
P 		1190.4
(1)
P 		461
avr 1445.3
(3) 		797.5
(-2.6) 		751.4
(-3) 		1316.9
(1.9) 		694

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 1228
(3)
P 		839
(-3)
P 		1136.5
(1.6)
P 		1124.4
(1.4)
P 		963.1
(-1.1)
P 		864.5
(-2.6)
P 		389
B 1391.6
(3)
P 		886.2
(-2.6)
P 		1078.7
(-0.5)
P 		1300.7
(2)
P 		850.2
(-3)
P 		1100.1
(-0.2)
P 		541
C 1042.5
(0.9)
P 		919
(-0.7)
P 		828.4
(-1.8)
P 		1204.4
(3)
P 		737.5
(-3)
P 		1010
(0.5)
P 		467
avr 1220.7
(3) 		881.4
(-2.5) 		1014.5
(-0.3) 		1209.8
(2.8) 		850.3
(-3) 		991.5
(-0.7) 		370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 497.6
(3)
P 		167.8
(-3)
P 		166.3
(-3)
P 		207.8
(-2.2)
P 		331
B 517.8
(3)
P 		181.7
(-2.8)
P 		168.6
(-3)
P 		285.8
(-1)
P 		349
C 445.3
(3)
P 		254.1
(-1.7)
P 		310.3
(-0.3)
P 		200.7
(-3)
P 		245
avr 486.9
(3) 		201.2
(-3) 		215.1
(-2.7) 		231.4
(-2.4) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 226.4
(-1.9)
P 		298.4
(3)
P 		247.5
(-0.5)
P 		285.2
(2.1)
P 		290.6
(2.5)
P 		210.5
(-3)
P 		88
B 484.2
(3)
P 		295
(-2.1)
P 		261.9
(-3)
P 		344.5
(-0.8)
P 		345.4
(-0.7)
P 		410.2
(1)
P 		222
C 386.4
(3)
P 		280.4
(-0.6)
P 		210.9
(-3)
P 		242.2
(-1.9)
P 		238.6
(-2.1)
P 		338.1
(1.3)
P 		176
avr 365.7
(3) 		291.3
(-0.6) 		240.1
(-3) 		290.6
(-0.6) 		291.5
(-0.5) 		319.6
(0.8) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175508_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21453
Sequence Type Exemplar sequence
Representative Public ID AU115977 NCBI
Target Description AU115977_rc /REP_DB=TREMBL Accession /GB=AU115977 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk739b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069420(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069420 NCBI Caenorhabditis elegans T04B2.5 (T04B2.5) mRNA, complete cds. 11/11 None
T04B2.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:10056575:10059150:-1 gene:T04B2.5 11/11 A 
T04B2.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:10056590:10059097:-1 gene:T04B2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10056648-10056935(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04B2.5
Entrez Gene 177869 Entrez gene
SwissProt Q22152 EMBL-EBI
WormBase CE06351 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
45735 nutrient reservoir activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92615 Hypothetical protein T04B2.5 [Caenorhabditis elegans] emb|CAA92628.1| Hypothetical protein T04B2.5 [Caenorhabditis elegans] ref|NP_501821.1| T04B2.5 [Caenorhabditis elegans] 0.0
blast CAE59937 Hypothetical protein CBG03423 [Caenorhabditis briggsae] 0.0
blast XP_781913 PREDICTED: similar to phospholipase A2, group VI [Strongylocentrotus purpuratus] 2.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 5.9E-51
Sequence
Target Sequence 
>C. ELEGANS:175508_AT
cattttttgattttctgcgacgtctagatgactttccagttcccatttaaaaacgggcat
tctcttcccaaaaaaggcacactttgctcctctcattttattcgtttctagtctcatctt
tcactgaaaattcatctaaagttttctcgggttcttatatcagttcccttaacactgtcc
actcatcctttcccatcccatttttatcactttttttcgtcagaaactcgatgtgattta
tttggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTTTTGATTTTCTGCGACGTCT 620 215 14 Antisense
CTGCGACGTCTAGATGACTTTCCAG 333 237 28 Antisense
TAGATGACTTTCCAGTTCCCATTTA 59 653 38 Antisense
AAAAAAGGCACACTTTGCTCCTCTC 178 131 83 Antisense
CTCCTCTCATTTTATTCGTTTCTAG 129 235 100 Antisense
GTTTCTAGTCTCATCTTTCACTGAA 264 451 117 Antisense
TTCATCTAAAGTTTTCTCGGGTTCT 442 687 144 Antisense
CTCGGGTTCTTATATCAGTTCCCTT 373 223 159 Antisense
TATCAGTTCCCTTAACACTGTCCAC 38 661 171 Antisense
ATCACTTTTTTTCGTCAGAAACTCG 685 23 219 Antisense
AGAAACTCGATGTGATTTATTTGGT 314 73 235 Antisense
Sequence Source Affymetrix Proprietary Database