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[175507_at]

Description AV184288_rc /REP_DB=TREMBL Accession /GB=AV184288 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662e10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 10      6grp_total > 17      4grp_total > 14      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1805
1 2 3 4 range
A 2214.8
(1)
P 		1319.4
(-2.5)
P 		1178.2
(-3)
P 		2752.6
(3)
P 		1574
B 2042.7
(0.1)
P 		1116.4
(-3)
P 		1196.6
(-2.7)
P 		2921.1
(3)
P 		1805
C 2154.6
(2.2)
P 		1177.1
(-3)
P 		1235.6
(-2.7)
P 		2295.9
(3)
P 		1119
avr 2137.4
(0.9) 		1204.3
(-3) 		1203.5
(-3) 		2656.5
(3) 		1453

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2161
1 2 3 4 5 6 range
A 1522.9
(2.7)
P 		1557.9
(3)
P 		974
(-1.2)
P 		862.6
(-2)
P 		721.3
(-3)
P 		922.4
(-1.6)
P 		837
B 1889.8
(3)
P 		1436.2
(0.6)
P 		1032.2
(-1.6)
P 		863.3
(-2.5)
P 		771.8
(-3)
P 		949.4
(-2)
P 		1118
C 2882.3
(3)
P 		1304.7
(-1.5)
P 		1109.9
(-2.1)
P 		791.9
(-3)
P 		1083.2
(-2.2)
P 		969.5
(-2.5)
P 		2090
avr 2098.3
(3) 		1432.9
(-0.2) 		1038.7
(-2) 		839.3
(-3) 		858.8
(-2.9) 		947.1
(-2.5) 		1259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 806.4
(3)
P 		286.4
(-3)
P 		308
(-2.8)
P 		402.9
(-1.7)
P 		520
B 651.4
(3)
P 		275.7
(-3)
P 		277.3
(-3)
P 		622.5
(2.5)
P 		376
C 713.2
(3)
P 		338.4
(-3)
P 		430.7
(-1.5)
P 		387.1
(-2.2)
P 		375
avr 723.7
(3) 		300.2
(-3) 		338.7
(-2.5) 		470.8
(-0.6) 		424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 909
1 2 3 4 5 6 range
A 280.7
(-1.8)
P 		554.1
(3)
P 		212.1
(-3)
P 		218.8
(-2.9)
P 		217.7
(-2.9)
P 		224.6
(-2.8)
P 		342
B 657.5
(3)
P 		478.1
(0.5)
P 		250.7
(-2.7)
P 		228.7
(-3)
P 		313.6
(-1.8)
P 		354
(-1.2)
P 		429
C 1068.4
(3)
P 		398.1
(-1.4)
P 		282.5
(-2.2)
P 		159.3
(-3)
P 		350.5
(-1.7)
P 		324.5
(-1.9)
P 		909
avr 668.9
(3) 		476.8
(0.5) 		248.4
(-2.4) 		202.3
(-3) 		293.9
(-1.8) 		301
(-1.7) 		467
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20469
Sequence Type Exemplar sequence
Representative Public ID AV184288 NCBI
Target Description AV184288_rc /REP_DB=TREMBL Accession /GB=AV184288 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk662e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182251 NCBI Caenorhabditis elegans Y17G7B.20 (Y17G7B.20) mRNA, complete cds. 11/11 None
Y17G7B.20 ENSEMBL cdna:known chromosome:CEL140:II:11977725:11979762:-1 gene:Y17G7B.20 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030404 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11977791-11978049(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17G7B.20
Entrez Gene 174837 Entrez gene
SwissProt Q8I4E8 EMBL-EBI
WormBase CE32515 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56603 Hypothetical protein Y17G7B.20 [Caenorhabditis elegans] ref|NP_872051.1| Y17G7B.20 [Caenorhabditis elegans] 1.0E-139
blast CAE73558 Hypothetical protein CBG21027 [Caenorhabditis briggsae] 1.0E-77
Sequence
Target Sequence 
>C. ELEGANS:175507_AT
gtgtgatgaggcagggcctatcgccgaagaaacagtggttagttttgatctttttgtaga
atctctgttcggaaattgtatctaactacagtatacacccccccaacaaaactacgaaaa
attgtacagtgcgcgactatcggattcgtttggaccccccaatactctccaaaaaaaaat
ttaaaagtggaaaatgcccaaaaaaaatcgatcgtcgtactct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTGATGAGGCAGGGCCTATCGCC 369 485 17 Antisense
GCAGGGCCTATCGCCGAAGAAACAG 108 291 27 Antisense
GCCTATCGCCGAAGAAACAGTGGTT 643 279 32 Antisense
ACAGTGGTTAGTTTTGATCTTTTTG 19 107 48 Antisense
GATCTTTTTGTAGAATCTCTGTTCG 104 421 63 Antisense
GAATCTCTGTTCGGAAATTGTATCT 198 329 75 Antisense
TATCTAACTACAGTATACACCCCCC 168 657 95 Antisense
AATTGTACAGTGCGCGACTATCGGA 460 179 136 Antisense
ACAGTGCGCGACTATCGGATTCGTT 620 107 142 Antisense
GCGACTATCGGATTCGTTTGGACCC 624 277 149 Antisense
CAAAAAAAATCGATCGTCGTACTCT 688 187 215 Antisense
Sequence Source Affymetrix Proprietary Database