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[175505_s_at]

Description AU115890_rc /REP_DB=TREMBL Accession /GB=AU115890 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738b10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 0      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 75      6grp_total > 09      4grp_total > 52      6grp_highest_sub > 03_04      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 672.5
(3)
P 		619.1
(0.7)
P 		629.2
(1.1)
P 		535.3
(-3)
P 		137
B 735.8
(3)
P 		628.6
(1.1)
P 		573
(0.1)
P 		395.6
(-3)
P 		340
C 682.8
(2.1)
P 		741.5
(3)
P 		587.3
(0.7)
P 		346.8
(-3)
P 		395
avr 697
(3) 		663.1
(2.2) 		596.5
(0.8) 		425.9
(-3) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 725
1 2 3 4 5 6 range
A 1186.4
(3)
P 		461.9
(-3)
P 		626.1
(-1.6)
P 		854.3
(0.2)
P 		722.5
(-0.8)
P 		631.8
(-1.6)
P 		725
B 945.5
(1.9)
P 		738.1
(-3)
P 		922.5
(1.3)
P 		829.9
(-0.8)
P 		993.1
(3)
P 		896.5
(0.7)
P 		255
C 622.1
(-1.6)
P 		788.9
(0)
P 		1071.5
(2.9)
P 		1085.4
(3)
P 		487.1
(-3)
P 		923.7
(1.4)
P 		598
avr 918
(2.9) 		663
(-3) 		873.4
(1.9) 		923.2
(3) 		734.2
(-1.4) 		817.3
(0.6) 		260
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 244.9
(3)
P 		134.4
(-1)
P 		164.5
(0.1)
P 		78.4
(-3)
P 		167
B 234.6
(3)
P 		155.2
(-0.2)
P 		132.8
(-1.1)
P 		84.3
(-3)
P 		150
C 226
(3)
P 		213.2
(2.5)
P 		204.7
(2.2)
P 		58.5
(-3)
P 		168
avr 235.2
(3) 		167.6
(0.5) 		167.3
(0.5) 		73.7
(-3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 267
1 2 3 4 5 6 range
A 218.7
(3)
P 		164.3
(-1)
P 		136.4
(-3)
P 		216.7
(2.9)
P 		218
(2.9)
P 		153.8
(-1.7)
P 		82
B 329
(0.6)
P 		245.7
(-2.2)
P 		224
(-2.9)
P 		219.8
(-3)
P 		403.5
(3)
P 		334.3
(0.7)
P 		184
C 230.6
(-0.1)
P 		240.7
(0.3)
P 		272.7
(1.6)
P 		218.3
(-0.6)
P 		157.6
(-3)
P 		309.2
(3)
P 		152
avr 259.4
(2.3) 		216.9
(-2.4) 		211
(-3) 		218.3
(-2.2) 		259.7
(2.3) 		265.8
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175505_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20161
Sequence Type Exemplar sequence
Representative Public ID AU115890 NCBI
Target Description AU115890_rc /REP_DB=TREMBL Accession /GB=AU115890 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk738b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025913(11), NM_001025912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025913 NCBI Caenorhabditis elegans F02E9.10b (F02E9.10) mRNA, complete cds. 11/11 None
NM_001025912 NCBI Caenorhabditis elegans F02E9.10a (F02E9.10) mRNA, complete cds. 11/11 None
SNAP00000012710 ENSEMBL cdna:SNAP chromosome:CEL140:I:8435330:8437938:-1 11/11 None
GENEFINDER00000012718 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8435330:8437938:-1 11/11 None
F02E9.10.1 ENSEMBL cdna:known chromosome:CEL140:I:8435240:8437957:-1 gene:F02E9.10 11/11 None
F02E9.10.2 ENSEMBL cdna:known chromosome:CEL140:I:8435330:8437946:-1 gene:F02E9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8435222-8435610(-) 100.0 100.0
Public Domain and Genome References
Ensembl F02E9.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79161 Hypothetical protein F02E9.10b [Caenorhabditis elegans] ref|NP_001021084.1| F02E9.10b [Caenorhabditis elegans] 0.0
blast CAC42275 Hypothetical protein F02E9.10a [Caenorhabditis elegans] ref|NP_001021083.1| F02E9.10a [Caenorhabditis elegans] 0.0
blast T20512 hypothetical protein F02E9.6 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.5E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.1E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.9E-7
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.5E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.1E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 6.9E-7
Sequence
Target Sequence 
>C. ELEGANS:175505_S_AT
gaaaatgagccaccgagcgactacactcaagaaggaggacatgaatattatcggtcacat
gaagaatacgacgctgctcaatatcaagagtataatccgtacgcagagccacgaacacca
ccacgtgaagatgatgaggaaattggaaattatgtgtacaacagtactacagaacatcag
caaaataatgaatctgcctctccaccagcacatgaacaatatgatccatcggcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAATGAGCCACCGAGCGACTACA 543 353 17 Antisense
CCACCGAGCGACTACACTCAAGAAG 501 273 26 Antisense
AGGACATGAATATTATCGGTCACAT 188 55 52 Antisense
GAGTATAATCCGTACGCAGAGCCAC 413 399 104 Antisense
TAATCCGTACGCAGAGCCACGAACA 206 635 109 Antisense
GCCACGAACACCACCACGTGAAGAT 223 279 124 Antisense
ACACCACCACGTGAAGATGATGAGG 470 107 131 Antisense
AACAGTACTACAGAACATCAGCAAA 140 137 176 Antisense
CAAAATAATGAATCTGCCTCTCCAC 192 191 197 Antisense
CTCTCCACCAGCACATGAACAATAT 525 231 214 Antisense
TGAACAATATGATCCATCGGCCTGA 432 573 229 Antisense
Sequence Source Affymetrix Proprietary Database