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[175504_at]

Description AU114951_rc /REP_DB=TREMBL Accession /GB=AU114951 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk724a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 54      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 72      6grp_total > 45      4grp_total > 60      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 210.4
(-1.1)
P 		382.9
(3)
P 		229.9
(-0.6)
P 		129.8
(-3)
P 		253
B 278.1
(2.1)
P 		262.5
(1.6)
P 		300.4
(3)
P 		143.1
(-3)
P 		157
C 391.1
(2.3)
P 		296.2
(-0.4)
P 		415.3
(3)
P 		205.4
(-3)
P 		210
avr 293.2
(2.2) 		313.9
(2.9) 		315.2
(3) 		159.4
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 376
(1.1)
P 		378.1
(1.1)
P 		433.1
(3)
P 		256.9
(-3)
P 		273.7
(-2.4)
P 		274.4
(-2.4)
P 		176
B 351
(-2.3)
P 		419.9
(-1.1)
P 		669.1
(3)
P 		348.7
(-2.3)
P 		305.6
(-3)
P 		423.7
(-1.1)
P 		364
C 450.6
(0.4)
P 		373.2
(-0.9)
P 		320.5
(-1.8)
P 		354.9
(-1.2)
P 		249
(-3)
P 		608.1
(3)
P 		359
avr 392.5
(0.5) 		390.4
(0.5) 		474.2
(3) 		320.2
(-1.7) 		276.1
(-3) 		435.4
(1.8) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 76.6
(2.4)
P 		83.1
(3)
P 		60.1
(0.8)
P 		19
(-3)
P 		64
B 88.7
(3)
P 		64.8
(0.5)
P 		69.6
(1)
P 		30.5
(-3)
P 		58
C 129.5
(2.2)
P 		85.2
(-0.2)
P 		144.7
(3)
P 		34.6
(-3)
P 		110
avr 98.3
(3) 		77.7
(1.2) 		91.5
(2.4) 		28
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 69.3
(-2.6)
P 		134.5
(3)
P 		94.3
(-0.5)
P 		65.2
(-3)
P 		82.6
(-1.5)
P 		66.8
(-2.9)
P 		69
B 122.1
(-0.5)
P 		139.8
(1.1)
P 		162.5
(3)
P 		92.4
(-3)
P 		124.1
(-0.3)
P 		158
(2.6)
P 		70
C 167
(1.3)
P 		113.9
(-1.1)
P 		81.6
(-2.5)
P 		71.4
(-3)
P 		80.6
(-2.6)
P 		203.6
(3)
P 		132
avr 119.5
(0.9) 		129.4
(1.8) 		112.8
(0.3) 		76.3
(-3) 		95.8
(-1.2) 		142.8
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21812
Sequence Type Exemplar sequence
Representative Public ID AU114951 NCBI
Target Description AU114951_rc /REP_DB=TREMBL Accession /GB=AU114951 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk724a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073389 NCBI Caenorhabditis elegans F17C11.11 (F17C11.11) mRNA, complete cds. 11/11 None
SNAP00000033892 ENSEMBL cdna:SNAP chromosome:CEL140:V:10940283:10941396:-1 11/11 None
GENEFINDER00000033909 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10940283:10941396:-1 11/11 None
F17C11.11 ENSEMBL cdna:known chromosome:CEL140:V:10940283:10941424:-1 gene:F17C11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10940293-10940619(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F17C11.11
Entrez Gene 179515 Entrez gene
SwissProt Q9BI97 EMBL-EBI
WormBase CE26809 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC35886 Hypothetical protein F17C11.11 [Caenorhabditis elegans] ref|NP_505790.1| F17C11.11 [Caenorhabditis elegans] 1.0E-151
blast CAE75127 Hypothetical protein CBG23055 [Caenorhabditis briggsae] 1.0E-113
blast CAE64845 Hypothetical protein CBG09641 [Caenorhabditis briggsae] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:175504_AT
aactttgtttcaattctgcagaaagagtataaagcatctaaccacggttgggaatggcca
catgtaggttattggagacgtgttgatcagctgaaagacaatcttcttgacttgagatat
ggagaaatcgaaaatctggatggtaaagatgttgatgagcatgatgatgtagaaccatca
gaggacgtagagcggagtgaaccatcaaaattctacaatcttgaagagcatctagtcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTGTTTCAATTCTGCAGAAAG 606 139 19 Antisense
GAGTATAAAGCATCTAACCACGGTT 422 397 43 Antisense
AACCACGGTTGGGAATGGCCACATG 92 145 58 Antisense
GGGAATGGCCACATGTAGGTTATTG 340 493 68 Antisense
ATTGGAGACGTGTTGATCAGCTGAA 266 3 89 Antisense
GATCAGCTGAAAGACAATCTTCTTG 460 421 103 Antisense
GACAATCTTCTTGACTTGAGATATG 34 365 115 Antisense
GAACCATCAGAGGACGTAGAGCGGA 416 345 190 Antisense
GGACGTAGAGCGGAGTGAACCATCA 706 523 201 Antisense
GGAGTGAACCATCAAAATTCTACAA 350 517 212 Antisense
CAATCTTGAAGAGCATCTAGTCGAT 84 181 234 Antisense
Sequence Source Affymetrix Proprietary Database