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[175501_at] casein kinase like

Description AV180656_rc /REP_DB=TREMBL Accession /GB=AV180656 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 92      6grp_total > 48      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 264.7
(1.4)
P 		211.8
(-0.7)
P 		302.1
(3)
P 		157.5
(-3)
P 		145
B 344.1
(3)
P 		256.5
(-0.5)
P 		213.1
(-2.3)
P 		194.9
(-3)
P 		149
C 243.9
(-1.8)
P 		351.4
(3)
P 		244.3
(-1.8)
P 		216.5
(-3)
P 		135
avr 284.2
(3) 		273.2
(2.3) 		253.2
(1) 		189.6
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 326.4
(3)
P 		326.4
(3)
P 		178.1
(-3)
P 		195.6
(-2.3)
P 		219.2
(-1.3)
P 		305.3
(2.1)
P 		148
B 332.9
(2.2)
P 		299.2
(1.1)
P 		278.7
(0.5)
P 		181.1
(-2.4)
P 		162.4
(-3)
P 		360.4
(3)
P 		198
C 506.7
(1.2)
P 		247.2
(-1.8)
P 		199.4
(-2.4)
P 		149.6
(-3)
P 		287.6
(-1.4)
P 		658.6
(3)
P 		509
avr 388.7
(1.8) 		290.9
(-0.4) 		218.7
(-2) 		175.4
(-3) 		223.1
(-1.9) 		441.4
(3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 96.4
(3)
P 		46
(-1.1)
P 		79
(1.6)
P 		23
(-3)
P 		73
B 109.7
(3)
P 		63.3
(-1.1)
P 		49.4
(-2.3)
P 		41.5
(-3)
P 		68
C 80.7
(1.1)
P 		101
(3)
P 		85.2
(1.5)
P 		36.5
(-3)
P 		65
avr 95.6
(3) 		70.1
(0.5) 		71.2
(0.6) 		33.7
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 60.2
(-1.3)
P 		116.1
(3)
P 		38.8
(-3)
P 		49.6
(-2.2)
P 		66.1
(-0.9)
P 		74.3
(-0.2)
P 		77
B 115.8
(1.7)
P 		99.6
(0.6)
P 		67.7
(-1.6)
P 		48
(-3)
P 		66
(-1.8)
P 		134.4
(3)
P 		86
C 187.8
(2)
P 		75.4
(-1.6)
P 		50.8
(-2.3)
P 		30.1
(-3)
P 		93.1
(-1)
P 		220.5
(3)
P 		190
avr 121.3
(1.7) 		97
(0.2) 		52.4
(-2.4) 		42.6
(-3) 		75.1
(-1.1) 		143.1
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20398
Sequence Type Exemplar sequence
Representative Public ID AV180656 NCBI
Target Description AV180656_rc /REP_DB=TREMBL Accession /GB=AV180656 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk610d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060293 NCBI Caenorhabditis elegans Y106G6E.6 (Y106G6E.6) mRNA, complete cds. 11/11 None
Y106G6E.6.2 ENSEMBL cdna:known chromosome:CEL140:I:10235348:10239335:-1 gene:Y106G6E.6 11/11 None
Y106G6E.6.1 ENSEMBL cdna:known chromosome:CEL140:I:10235348:10239337:-1 gene:Y106G6E.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10235562-10235841(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein kinase like
Ensembl Y106G6E.6
Entrez Gene 172891 Entrez gene
SwissProt Q8WQ99 EMBL-EBI
WormBase CE29604 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18620.1.S1_S_AT similar to casein kinase 1, gamma 3 cfa
CANINE_2:CFAAFFX.1778.1.S1_AT similar to casein kinase 1, gamma 3 cfa
CANINE_2:CFAAFFX.1779.1.S1_AT similar to casein kinase 1, gamma 3 cfa
CANINE_2:CFAAFFX.1779.1.S1_S_AT similar to casein kinase 1, gamma 3 cfa
CANINE_2:CFAAFFX.1781.1.S1_AT similar to casein kinase 1, gamma 3 cfa
DROSOPHILA_2:1626805_S_AT gilgamesh dm
DROSGENOME1:154428_AT gilgamesh dm
HG-U133_PLUS_2:220768_S_AT casein kinase 1, gamma 3 hs
HG-U133A_2:220768_S_AT casein kinase 1, gamma 3 hs
HG-U133A:220768_S_AT casein kinase 1, gamma 3 hs
HG-FOCUS:220768_S_AT casein kinase 1, gamma 3 hs
HU35KSUBA:RC_AA417569_F_AT casein kinase 1, gamma 3 hs
HU35KSUBA:RC_AA417569_I_AT casein kinase 1, gamma 3 hs
HU35KSUBD:RC_AA398116_AT casein kinase 1, gamma 3 hs
U133_X3P:G4758079_3P_A_AT casein kinase 1, gamma 3 hs
U133_X3P:HS.30164.0.S1_3P_AT casein kinase 1, gamma 3 hs
U133_X3P:HS.164004.0.A1_3P_AT casein kinase 1, gamma 3 hs
HG-U133_PLUS_2:227767_AT casein kinase 1, gamma 3 hs
HG-U133B:227767_AT casein kinase 1, gamma 3 hs
HG-U133_PLUS_2:229702_AT casein kinase 1, gamma 3 hs
HG-U133B:229702_AT casein kinase 1, gamma 3 hs
HG-U95C:55901_AT casein kinase 1, gamma 3 hs
HG-U95C:61660_AT casein kinase 1, gamma 3 hs
HG-U95E:75730_AT casein kinase 1, gamma 3 hs
HG-U95E:87730_AT casein kinase 1, gamma 3 hs
HG-U95E:67970_AT Casein kinase 1, gamma 3 hs
HG-U95E:74434_AT Casein kinase 1, gamma 3 hs
HU35KSUBC:RC_H78783_AT Casein kinase 1, gamma 3 hs
RG-U34A:U22321_AT casein kinase 1, gamma 3 rn
RAE230A:1368850_AT casein kinase 1, gamma 3 rn
RAT230_2:1368850_AT casein kinase 1, gamma 3 rn
RAE230A:1368849_AT casein kinase 1, gamma 3 rn
RAT230_2:1368849_AT casein kinase 1, gamma 3 rn
RAE230A:1372582_AT Casein kinase 1, gamma 3 rn
RAT230_2:1372582_AT Casein kinase 1, gamma 3 rn
RG-U34C:RC_AI178699_AT Casein kinase 1, gamma 3 rn
YEAST_2:1774324_AT Palmitoylated, plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck2p in morphogenesis, proper septin assembly, endocytic trafficking; provides an essential function overlapping with that of Yck2p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60309 Hypothetical protein Y106G6E.6 [Caenorhabditis elegans] ref|NP_492694.1| Y106G6E.6 [Caenorhabditis elegans] 0.0
blast CAE66844 Hypothetical protein CBG12215 [Caenorhabditis briggsae] 0.0
blast XP_779900 PREDICTED: similar to casein kinase 1, gamma 3 isoform 1 [Strongylocentrotus purpuratus] 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.6E-33
Sequence
Target Sequence 
>C. ELEGANS:175501_AT
cccactcgaattaaacctatcaaagtgttgttttccaaagaaaaaaagcaaaagaaaccg
atgtacgttcccacacccacccaaaatccactccattcttcttcttcaattatttcaatt
tcatcctcatcatcaatcgttttaccccggattcccccaccagttactttttacccaatt
cttccatatattttatatacgtcttcaattctcaaccaatatagcgtggtgaaaaaactt
gtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCACTCGAATTAAACCTATCAAAG 66 257 17 Antisense
CCTATCAAAGTGTTGTTTTCCAAAG 210 267 32 Antisense
ATTATTTCAATTTCATCCTCATCAT 95 15 125 Antisense
CCTCATCATCAATCGTTTTACCCCG 171 269 141 Antisense
TCATCATCAATCGTTTTACCCCGGA 216 619 143 Antisense
ATCATCAATCGTTTTACCCCGGATT 596 29 145 Antisense
TACCCAATTCTTCCATATATTTTAT 549 649 188 Antisense
TATTTTATATACGTCTTCAATTCTC 298 663 205 Antisense
GTCTTCAATTCTCAACCAATATAGC 181 469 217 Antisense
AATTCTCAACCAATATAGCGTGGTG 102 177 223 Antisense
ATAGCGTGGTGAAAAAACTTGTGAT 36 21 237 Antisense
Sequence Source Affymetrix Proprietary Database