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[175500_at]

Description AV200204_rc /REP_DB=TREMBL Accession /GB=AV200204 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk558d11 : 3prime end, single read.
Cluster 6grp_total > 93      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.8
(-3)
A 		7.2
(3)
A 		3.1
(-2.6)
A 		3.7
(-1.8)
A 		4
B 7.3
(3)
A 		6.7
(2.2)
A 		2.7
(-3)
A 		2.8
(-2.9)
A 		5
C 3.8
(1.9)
A 		4.3
(3)
A 		1.6
(-3)
A 		2.7
(-0.6)
A 		3
avr 4.6
(0.5) 		6.1
(3) 		2.5
(-3) 		3.1
(-2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 2.9
(-3)
A 		5.8
(-2.5)
A 		16.1
(-0.5)
A 		4.5
(-2.7)
A 		34.9
(3)
A 		4.5
(-2.7)
A 		32
B 12.3
(3)
A 		2.3
(-2.5)
A 		1.4
(-3)
A 		2.2
(-2.6)
A 		6.9
(0)
A 		3.3
(-2)
A 		11
C 3.3
(-2.5)
A 		22.3
(3)
A 		3.7
(-2.4)
A 		3
(-2.6)
A 		1.5
(-3)
A 		18.6
(1.9)
A 		21
avr 6.2
(-1.4) 		10.1
(0.7) 		7.1
(-0.9) 		3.2
(-3) 		14.4
(3) 		8.8
(0) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1
(-0.3)
A 		1.6
(3)
A 		0.8
(-1.4)
A 		0.5
(-3)
A 		1
B 2.3
(3)
A 		1.7
(0.9)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2
C 1.3
(3)
A 		1.2
(2.3)
A 		0.6
(-2.3)
A 		0.5
(-3)
A 		1
avr 1.5
(3) 		1.5
(3) 		0.7
(-1.8) 		0.5
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.1
(-2)
A 		3.5
(-1.2)
A 		1.2
(-2.6)
A 		10.5
(3)
A 		1.1
(-2.6)
A 		10
B 4.3
(3)
A 		0.8
(-2.3)
A 		0.3
(-3)
A 		0.6
(-2.6)
A 		2.8
(0.8)
A 		1.2
(-1.7)
A 		4
C 1.2
(-2.3)
A 		6.8
(3)
A 		1
(-2.5)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		6.2
(2.4)
A 		6
avr 2
(-1.1) 		3.2
(0.8) 		1.6
(-1.7) 		0.8
(-3) 		4.6
(3) 		2.8
(0.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21927
Sequence Type Exemplar sequence
Representative Public ID AV200204 NCBI
Target Description AV200204_rc /REP_DB=TREMBL Accession /GB=AV200204 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk558d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200204
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200204 AV200204_rc /REP_DB=TREMBL Accession /GB=AV200204 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk558d11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_074623 11/11 Negative Strand Matching Probes A 
SNAP00000027904 10/11 Negative Strand Matching Probes None
GENEFINDER00000027927 10/11 Negative Strand Matching Probes None
T10C6.5 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16025983-16026308(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175500_AT
gactcggcagcaatttgatccattcgttggcgtttcgaatggcttgaagacgaagaagca
gagtcacgagcacgcttctcacggattgcgtttcgctccttgtcttccaattcacgacgg
agatcttctttctcaaatcggcttcagtctcctgtccggtctgtctgtacttcattttgg
tgtgagatggcatatccttcgacgagtattgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCGGCAGCAATTTGATCCATTC 277 375 41 Antisense
TTTGATCCATTCGTTGGCGTTTCGA 66 667 54 Antisense
ATTCGTTGGCGTTTCGAATGGCTTG 469 9 62 Antisense
GAAGCAGAGTCACGAGCACGCTTCT 619 341 95 Antisense
CACGCTTCTCACGGATTGCGTTTCG 88 201 111 Antisense
TCCTTGTCTTCCAATTCACGACGGA 410 591 137 Antisense
TCACGACGGAGATCTTCTTTCTCAA 597 625 152 Antisense
TTCTTTCTCAAATCGGCTTCAGTCT 354 689 166 Antisense
CGGTCTGTCTGTACTTCATTTTGGT 503 243 197 Antisense
GGTGTGAGATGGCATATCCTTCGAC 710 497 219 Antisense
GGCATATCCTTCGACGAGTATTGAT 392 537 229 Antisense
Sequence Source Affymetrix Proprietary Database