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[175499_s_at]

Description AV199948_rc /REP_DB=TREMBL Accession /GB=AV199948 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk554b10 : 3prime end, single read.
Cluster 6grp_total > 86      4grp_total > 17      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 23.8
(-3)
A 		48.7
(-1)
A 		39.8
(-1.7)
A 		98.6
(3)
P 		75
B 22.6
(-2.4)
A 		19.8
(-3)
A 		37.4
(0.8)
A 		47.9
(3)
P 		28
C 30.2
(-3)
A 		36.4
(-2)
P 		35.4
(-2.2)
P 		68.2
(3)
P 		38
avr 25.5
(-3) 		35
(-1.8) 		37.5
(-1.4) 		71.6
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 25.6
(-1.6)
A 		9.7
(-3)
A 		14.6
(-2.6)
A 		44
(-0)
A 		61.6
(1.5)
P 		78.6
(3)
P 		69
B 11.5
(-3)
A 		30.3
(-1.9)
P 		28.4
(-2)
A 		27.3
(-2)
A 		78.7
(1.1)
P 		110.8
(3)
P 		99
C 7.5
(-3)
A 		31
(-1.6)
A 		50.6
(-0.4)
P 		65.3
(0.5)
A 		60.7
(0.2)
P 		106.2
(3)
P 		99
avr 14.9
(-3) 		23.7
(-2.4) 		31.2
(-1.8) 		45.5
(-0.8) 		67
(0.7) 		98.5
(3) 		84
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.7
(-3)
A 		10.6
(-1)
A 		10.4
(-1.2)
A 		14.4
(3)
P 		6
B 7.2
(-0.4)
A 		4.9
(-3)
A 		8.7
(1.3)
A 		10.2
(3)
P 		5
C 10
(-3)
A 		10.5
(-1.7)
P 		12.3
(3)
P 		11.5
(0.9)
P 		2
avr 8.6
(-3) 		8.7
(-2.8) 		10.5
(0.4) 		12
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.7
(-2.4)
A 		3.5
(-2.9)
A 		3.2
(-3)
A 		11.2
(0)
A 		18.6
(2.8)
P 		19.1
(3)
P 		16
B 4
(-3)
A 		10.1
(-2)
P 		6.9
(-2.5)
A 		7.2
(-2.5)
A 		32
(1.5)
P 		41.3
(3)
P 		37
C 2.8
(-3)
A 		9.5
(-1.8)
A 		12.9
(-1.2)
P 		13.1
(-1.1)
A 		19.7
(0.1)
P 		35.6
(3)
P 		33
avr 3.8
(-3) 		7.7
(-2.2) 		7.7
(-2.2) 		10.5
(-1.6) 		23.4
(1.2) 		32
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175499_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20055
Sequence Type Exemplar sequence
Representative Public ID AV199948 NCBI
Target Description AV199948_rc /REP_DB=TREMBL Accession /GB=AV199948 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk554b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058786 NCBI Caenorhabditis elegans INneXin family member (inx-21) (inx-21) mRNA, complete cds. 11/11 A 
SNAP00000033999 ENSEMBL cdna:SNAP chromosome:CEL140:I:3611944:3618109:1 11/11 None
GENEFINDER00000034093 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3611944:3618109:1 11/11 None
Y47G6A.1 ENSEMBL cdna:known chromosome:CEL140:I:3611881:3618308:1 gene:Y47G6A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3612456-3613720(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol inx-21
Ensembl Y47G6A.1
Entrez Gene 171930 Entrez gene
SwissProt Q9N3R4 EMBL-EBI
WormBase CE38570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491187 INneXin family member (inx-21) [Caenorhabditis elegans] gb|AAF60654.3| Innexin protein 21 [Caenorhabditis elegans] 0.0
blast CAE66629 Hypothetical protein CBG11965 [Caenorhabditis briggsae] 1.0E-124
blast CAE66628 Hypothetical protein CBG11964 [Caenorhabditis briggsae] 9.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491187.2 4 26-43,106-128,190-212,292-314
Y47G6A.1 4 47-64,127-149,211-233,313-335
SNAP00000033999 4 26-43,106-128,190-212,292-314
GENEFINDER00000034093 4 26-43,106-128,190-212,292-314
Sequence
Target Sequence 
>C. ELEGANS:175499_S_AT
gaacgactcgttgaaatggagggttggagacgtagaaaattggctgctcaattgaataaa
tggattatggcgaagagaaatttcttctgcggtctctcacaaacaatgatcatctacgtc
ctaatgaaatggttccgaactattcttttcattgctcaattctggattattgccgacgtt
tttggagatggaaatttcttttggggctatgctgatttagcccgaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGACTCGTTGAAATGGAGGGTT 255 347 17 Antisense
GAGACGTAGAAAATTGGCTGCTCAA 661 393 43 Antisense
TTCTGCGGTCTCTCACAAACAATGA 560 693 101 Antisense
AAACAATGATCATCTACGTCCTAAT 396 129 117 Antisense
TCTACGTCCTAATGAAATGGTTCCG 7 1 129 Antisense
AATGGTTCCGAACTATTCTTTTCAT 439 163 144 Antisense
CGAACTATTCTTTTCATTGCTCAAT 475 253 152 Antisense
AATTCTGGATTATTGCCGACGTTTT 601 175 174 Antisense
ATTGCCGACGTTTTTGGAGATGGAA 308 7 185 Antisense
GGAAATTTCTTTTGGGGCTATGCTG 326 527 206 Antisense
GGCTATGCTGATTTAGCCCGAATTG 161 539 221 Antisense
Sequence Source Affymetrix Proprietary Database