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[175498_at]

Description AU114277_rc /REP_DB=TREMBL Accession /GB=AU114277 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk717c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 80      6grp_total > 05      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 314.1
(3)
P 		214.2
(-1.1)
P 		245
(0.2)
P 		167.1
(-3)
P 		147
B 345.2
(3)
P 		242.1
(-0.1)
P 		145.5
(-3)
P 		178.7
(-2)
P 		200
C 253.1
(-0.2)
P 		280
(1)
P 		327.6
(3)
P 		186.4
(-3)
P 		141
avr 304.1
(3) 		245.4
(0.2) 		239.4
(-0.1) 		177.4
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 207
(-0.3)
P 		250.1
(2.1)
P 		244.5
(1.8)
P 		157.7
(-3)
P 		267.1
(3)
P 		180.6
(-1.7)
P 		109
B 317.5
(2.4)
P 		338.3
(3)
P 		125.5
(-3)
P 		167.3
(-1.8)
P 		190.5
(-1.2)
P 		182.1
(-1.4)
P 		213
C 351.1
(3)
P 		215
(-0.8)
P 		157.2
(-2.5)
P 		203.3
(-1.2)
P 		220
(-0.7)
P 		138.1
(-3)
P 		213
avr 291.9
(3) 		267.8
(1.8) 		175.7
(-2.6) 		176.1
(-2.6) 		225.9
(-0.2) 		166.9
(-3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 114.4
(3)
P 		46.5
(-1.5)
P 		64
(-0.4)
P 		24.5
(-3)
P 		90
B 110.1
(3)
P 		59.8
(-1)
P 		33.7
(-3)
P 		38.1
(-2.7)
P 		76
C 83.8
(0.8)
P 		80.5
(0.6)
P 		114.2
(3)
P 		31.4
(-3)
P 		83
avr 102.8
(3) 		62.3
(-0.4) 		70.6
(0.3) 		31.3
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 38.2
(-3)
P 		88.9
(3)
P 		53.3
(-1.2)
P 		40
(-2.8)
P 		80.6
(2)
P 		44
(-2.3)
P 		51
B 110.5
(2.8)
P 		112.6
(3)
P 		30.5
(-3)
P 		44.3
(-2)
P 		77.4
(0.4)
P 		67.9
(-0.3)
P 		82
C 130.1
(3)
P 		65.6
(-1.3)
P 		40
(-3)
P 		40.9
(-2.9)
P 		71.2
(-0.9)
P 		46.2
(-2.6)
P 		90
avr 92.9
(3) 		89
(2.5) 		41.3
(-3) 		41.7
(-3) 		76.4
(1.1) 		52.7
(-1.7) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21491
Sequence Type Exemplar sequence
Representative Public ID AU114277 NCBI
Target Description AU114277_rc /REP_DB=TREMBL Accession /GB=AU114277 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk717c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069645 NCBI Caenorhabditis elegans Y43E12A.2 (Y43E12A.2) mRNA, complete cds. 11/11 None
Y43E12A.2 ENSEMBL cdna:known chromosome:CEL140:IV:10982038:10984973:1 gene:Y43E12A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10984621-10984897(+) 98.57 98.57
Public Domain and Genome References
Gene Title
Ensembl Y43E12A.2
Entrez Gene 177993 Entrez gene
SwissProt O45925 EMBL-EBI
WormBase CE35661 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15974 Hypothetical protein Y43E12A.2 [Caenorhabditis elegans] ref|NP_502046.2| Y43E12A.2 [Caenorhabditis elegans] 1.0E-136
blast CAE61968 Hypothetical protein CBG05969 [Caenorhabditis briggsae] 1.0E-130
blast AAH39249 C10orf56 protein [Homo sapiens] 2.0E-26
Sequence
Target Sequence 
>C. ELEGANS:175498_AT
atttgtatcatattgttttcttcacaaaatttctgctagatttctatgaaaatcagagag
ctttcaattcttctccactttttctattttgtgtgtacatgtcgttcctaaaccattttc
cctttcccatcccacactttccatgccgcccgaccactttctcaactgtctccaggtact
ctgtaaatttctgaatttattcatcctgaaaaactctttctatatatttgatgatcactt
ttatttcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGTATCATATTGTTTTCTTCAC 133 19 13 Antisense
TCTTCACAAAATTTCTGCTAGATTT 55 617 31 Antisense
TCTTCTCCACTTTTTCTATTTTGTG 582 617 81 Antisense
TTGTGTGTACATGTCGTTCCTAAAC 559 707 101 Antisense
TACATGTCGTTCCTAAACCATTTTC 608 643 108 Antisense
CTCAACTGTCTCCAGGTACTCTGTA 230 227 173 Antisense
GTCTCCAGGTACTCTGTAAATTTCT 444 469 180 Antisense
AAATTTCTGAATTTATTCATCCTGA 66 117 197 Antisense
TATTCATCCTGAAAAACTCTTTCTA 547 663 210 Antisense
AAAAACTCTTTCTATATATTTGATG 275 129 221 Antisense
ATTTGATGATCACTTTTATTTCTTC 134 19 238 Antisense
Sequence Source Affymetrix Proprietary Database