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[175495_at]

Description AU116588_rc /REP_DB=TREMBL Accession /GB=AU116588 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk746e10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 59      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 82      6grp_total > 39      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 403.6
(3)
P 		211.5
(-2.8)
P 		211.2
(-2.9)
P 		206.5
(-3)
P 		197
B 477.8
(3)
P 		173.2
(-3)
P 		196.6
(-2.5)
P 		326.7
(0)
P 		305
C 458.2
(3)
P 		221.6
(-3)
P 		243.3
(-2.4)
P 		273.6
(-1.7)
P 		237
avr 446.5
(3) 		202.1
(-3) 		217
(-2.6) 		268.9
(-1.4) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 276.2
(-3)
P 		392.8
(1.4)
P 		314.3
(-1.6)
P 		322.8
(-1.3)
P 		436.3
(3)
P 		346
(-0.4)
P 		160
B 452.2
(3)
P 		381
(1)
P 		240.6
(-3)
P 		334.7
(-0.3)
P 		401.2
(1.6)
P 		355.7
(0.3)
P 		212
C 454.1
(1.5)
P 		384.1
(-0.7)
P 		336.2
(-2.2)
P 		429.7
(0.7)
P 		311.9
(-3)
P 		501.8
(3)
P 		190
avr 394.2
(2.6) 		386
(2.1) 		297
(-3) 		362.4
(0.8) 		383.1
(2) 		401.2
(3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 146.9
(3)
P 		45.9
(-2.2)
P 		55.2
(-1.7)
P 		30.2
(-3)
P 		117
B 152.4
(3)
P 		42.8
(-3)
P 		45.6
(-2.8)
P 		69.6
(-1.5)
P 		110
C 151.7
(3)
P 		63.7
(-2)
P 		84.8
(-0.8)
P 		46.1
(-3)
P 		106
avr 150.3
(3) 		50.8
(-2.9) 		61.9
(-2.2) 		48.6
(-3) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 50.9
(-3)
P 		139.7
(3)
P 		68.5
(-1.8)
P 		81.9
(-0.9)
P 		131.7
(2.5)
P 		84.2
(-0.7)
P 		89
B 157.3
(2.7)
P 		126.8
(0.9)
P 		58.4
(-3)
P 		88.7
(-1.3)
P 		163
(3)
P 		132.6
(1.3)
P 		105
C 168.3
(3)
P 		117.2
(-0.7)
P 		85.6
(-3)
P 		86.4
(-2.9)
P 		100.9
(-1.9)
P 		168
(3)
P 		83
avr 125.5
(2.4) 		127.9
(2.6) 		70.8
(-3) 		85.7
(-1.5) 		131.9
(3) 		128.3
(2.6) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20312
Sequence Type Exemplar sequence
Representative Public ID AU116588 NCBI
Target Description AU116588_rc /REP_DB=TREMBL Accession /GB=AU116588 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk746e10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059739 NCBI Caenorhabditis elegans T23G11.5 (T23G11.5) mRNA, complete cds. 11/11 None
T23G11.5.2 ENSEMBL cdna:known chromosome:CEL140:I:7691467:7702316:1 gene:T23G11.5 11/11 A 
T23G11.5.1 ENSEMBL cdna:known chromosome:CEL140:I:7691468:7702323:1 gene:T23G11.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7701912-7702196(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G11.5
Entrez Gene 172530 Entrez gene
SwissProt Q9XVI0 EMBL-EBI
WormBase CE28965 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1594988_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
CANINE_2:CFA.14547.1.A1_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
CANINE_2:CFA.14547.1.A1_S_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
CANINE_2:CFA.20846.1.S1_S_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
CANINE_2:CFAAFFX.28582.1.S1_AT similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) cfa
DROSOPHILA_2:1637284_AT dm
DROSGENOME1:144109_AT dm
CHICKEN:GGAAFFX.11751.1.S1_S_AT ralA binding protein 1 gga
HG-U133_PLUS_2:202845_S_AT ralA binding protein 1 hs
HG-U133A_2:202845_S_AT ralA binding protein 1 hs
HG-U133A:202845_S_AT ralA binding protein 1 hs
HG-FOCUS:202845_S_AT ralA binding protein 1 hs
HUGENEFL:L42542_AT ralA binding protein 1 hs
U133_X3P:G5803144_3P_A_AT ralA binding protein 1 hs
U133_X3P:HS.75447.2.S1_3P_X_AT ralA binding protein 1 hs
U133_X3P:HS.75447.2.S1_3P_A_AT ralA binding protein 1 hs
U133_X3P:HS.75447.0.S1_3P_A_AT ralA binding protein 1 hs
HG-U133A_2:202844_S_AT ralA binding protein 1 hs
HG-U133_PLUS_2:202844_S_AT ralA binding protein 1 hs
HG-U133A:202844_S_AT ralA binding protein 1 hs
HG-U133_PLUS_2:226957_X_AT ralA binding protein 1 hs
HG-U133B:226957_X_AT ralA binding protein 1 hs
HG-U95AV2:36628_AT ralA binding protein 1 hs
HG-U95D:74796_AT ralA binding protein 1 hs
HG-U133_PLUS_2:242073_AT RalA binding protein 1 hs
HG-U133B:242073_AT RalA binding protein 1 hs
HG-U95C:60570_AT RalA binding protein 1 hs
HU35KSUBC:RC_N50646_AT RalA binding protein 1 hs
U133_X3P:HS.47083.0.A1_3P_AT RalA binding protein 1 hs
MU11KSUBB:X80937_S_AT ralA binding protein 1 mm
MG-U74AV2:93255_AT ralA binding protein 1 mm
MOE430A:1448634_AT ralA binding protein 1 mm
MOUSE430A_2:1448634_AT ralA binding protein 1 mm
MOUSE430_2:1448634_AT ralA binding protein 1 mm
MOE430A:1417248_AT ralA binding protein 1 mm
MOUSE430A_2:1417248_AT ralA binding protein 1 mm
MOUSE430_2:1417248_AT ralA binding protein 1 mm
MU19KSUBA:TC23537_S_AT RalA binding protein 1 (Ralbp1), mRNA mm
MU19KSUBA:TC23711_F_AT RalA binding protein 1 (Ralbp1), mRNA mm
MU19KSUBC:TC35729_S_AT RalA binding protein 1 (Ralbp1), mRNA mm
MU19KSUBC:TC36027_AT RalA binding protein 1 (Ralbp1), mRNA mm
MU19KSUBC:TC41949_S_AT RalA binding protein 1 (Ralbp1), mRNA mm
RG-U34A:U82623_AT ralA binding protein 1 rn
RG-U34A:U82623_G_AT ralA binding protein 1 rn
RG-U34A:RC_AI235506_S_AT ralA binding protein 1 rn
RG-U34A:RC_AA900900_S_AT ralA binding protein 1 rn
RAE230A:1368218_AT ralA binding protein 1 rn
RAT230_2:1368218_AT ralA binding protein 1 rn
RAE230A:1368217_AT ralA binding protein 1 rn
RAT230_2:1368217_AT ralA binding protein 1 rn
Protein Similarities
Method ID Description E-Value
blast CAB03414 Hypothetical protein T23G11.5 [Caenorhabditis elegans] ref|NP_492140.1| T23G11.5 [Caenorhabditis elegans] 0.0
blast CAE57361 Hypothetical protein CBG00305 [Caenorhabditis briggsae] 1.0E-159
blast XP_547670 PREDICTED: similar to RalA binding protein 1 (RalBP1) (Ral interacting protein 1) (76-kDa Ral-interacting protein) (Dinitrophenyl S-glutathione ATPase) (DNP-SG ATPase) [Canis familiaris] 3.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 2.6E-21
Sequence
Target Sequence 
>C. ELEGANS:175495_AT
tcaataattcttagtcttttccttcctcaagtcaataaatgtgcatattttccatattcc
atatctacccctaactcacactccccttctttttgacatttatattagctttatcattcg
tttttgttaactttaatcacaaaaaatccgggcataatttctctttaccatcttcacttt
tcatgtcatttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATAATTCTTAGTCTTTTCCTTC 623 633 40 Antisense
GTCTTTTCCTTCCTCAAGTCAATAA 94 467 53 Antisense
TAAATGTGCATATTTTCCATATTCC 326 639 75 Antisense
ATTTTCCATATTCCATATCTACCCC 65 15 86 Antisense
CTCCCCTTCTTTTTGACATTTATAT 461 233 120 Antisense
ATTAGCTTTATCATTCGTTTTTGTT 386 13 143 Antisense
TAATCACAAAAAATCCGGGCATAAT 521 635 173 Antisense
ATCCGGGCATAATTTCTCTTTACCA 426 39 185 Antisense
GCATAATTTCTCTTTACCATCTTCA 247 309 191 Antisense
CTTTACCATCTTCACTTTTCATGTC 22 223 202 Antisense
ATCTTCACTTTTCATGTCATTTGTT 619 31 209 Antisense
Sequence Source Affymetrix Proprietary Database