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[175492_at]

Description AV177145_rc /REP_DB=TREMBL Accession /GB=AV177145 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk525a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 84      6grp_total > 48      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 922.2
(2.3)
P 		483.6
(-2.3)
P 		414.3
(-3)
P 		987.2
(3)
P 		573
B 991.9
(3)
P 		515.6
(-2)
P 		425.4
(-3)
P 		921.5
(2.3)
P 		567
C 900.8
(3)
P 		607.3
(-1.1)
P 		472.3
(-3)
P 		808.6
(1.7)
P 		429
avr 938.3
(3) 		535.5
(-1.8) 		437.3
(-3) 		905.8
(2.6) 		501

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 633
1 2 3 4 5 6 range
A 1006.4
(3)
P 		501.9
(-1.8)
P 		439
(-2.4)
P 		373.3
(-3)
P 		681.5
(-0.1)
P 		802.4
(1.1)
P 		633
B 901.4
(2.7)
P 		562.9
(-1.4)
P 		429.8
(-3)
P 		567.1
(-1.3)
P 		520.8
(-1.9)
P 		926.9
(3)
P 		497
C 713.6
(0.5)
P 		622.6
(-0.5)
P 		398.1
(-3)
P 		545.4
(-1.4)
P 		490.6
(-2)
P 		935
(3)
P 		537
avr 873.8
(2.8) 		562.5
(-1.2) 		422.3
(-3) 		495.3
(-2.1) 		564.3
(-1.2) 		888.1
(3) 		466
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 335.8
(3)
P 		105
(-3)
P 		108.3
(-2.9)
P 		144.5
(-2)
P 		231
B 316.3
(3)
P 		127.3
(-2.2)
P 		98.6
(-3)
P 		196.4
(-0.3)
P 		218
C 298.2
(3)
P 		174.6
(-1.6)
P 		164.6
(-2)
P 		136.3
(-3)
P 		162
avr 316.8
(3) 		135.6
(-2.6) 		123.8
(-3) 		159.1
(-1.9) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 185.5
(1.9)
P 		178.5
(1.5)
P 		95.6
(-3)
P 		94.7
(-3)
P 		205.7
(3)
P 		195.4
(2.4)
P 		111
B 313.6
(2.2)
P 		187.3
(-0.9)
P 		104.4
(-3)
P 		150.2
(-1.9)
P 		211.6
(-0.3)
P 		345.6
(3)
P 		241
C 264.5
(1.6)
P 		190
(-0.5)
P 		101.3
(-3)
P 		109.7
(-2.8)
P 		158.8
(-1.4)
P 		313
(3)
P 		212
avr 254.5
(2) 		185.3
(-0.2) 		100.4
(-3) 		118.2
(-2.4) 		192
(-0) 		284.7
(3) 		184
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20709
Sequence Type Exemplar sequence
Representative Public ID AV177145 NCBI
Target Description AV177145_rc /REP_DB=TREMBL Accession /GB=AV177145 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk525a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170997
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170997 NCBI Caenorhabditis elegans C25H3.6a (C25H3.6) mRNA, complete cds. None
GENEFINDER00000016817 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5665085:5666172:1 None
C25H3.6a ENSEMBL cdna:known chromosome:CEL140:II:5661136:5665213:1 gene:C25H3.6 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5664851-5665123(+) 100.0 100.0
Public Domain and Genome References
Ensembl C25H3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31458 Hypothetical protein C25H3.6a [Caenorhabditis elegans] ref|NP_740996.1| C25H3.6a [Caenorhabditis elegans] 0.0
blast T15624 hypothetical protein C25H3.6 - Caenorhabditis elegans 0.0
blast CAE59164 Hypothetical protein CBG02470 [Caenorhabditis briggsae] emb|CAE59162.1| Hypothetical protein CBG02468 [Caenorhabditis briggsae] 0.0
blast AAY55856 Hypothetical protein C25H3.15 [Caenorhabditis elegans] ref|NP_001021983.1| C25H3.15 [Caenorhabditis elegans] 6.0E-75
blast CAE59165 Hypothetical protein CBG02471 [Caenorhabditis briggsae] 7.0E-69
blast CAE72638 Hypothetical protein CBG19840 [Caenorhabditis briggsae] 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:175492_AT
cttgccacattaccaataccatttttcttgtctgtaattatatcaattttgtgctcactt
ttccttctttgttcctaattttcttgctcatttcatccagtttttttcttttctctctct
ctttgtgtccttactggtcatactgatgttttatcaacactttcccttcctattttcttc
ctaggttccactgattacggtacttattaggtttttcaattgctttcagtatggctaccg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTGCCACATTACCAATACCATTTT 570 217 13 Antisense
AATACCATTTTTCTTGTCTGTAATT 168 171 27 Antisense
CAATTTTGTGCTCACTTTTCCTTCT 258 181 56 Antisense
TAATTTTCTTGCTCATTTCATCCAG 312 635 88 Antisense
TTGCTCATTTCATCCAGTTTTTTTC 597 703 96 Antisense
TCTCTTTGTGTCCTTACTGGTCATA 119 613 130 Antisense
GTGTCCTTACTGGTCATACTGATGT 622 487 137 Antisense
GATGTTTTATCAACACTTTCCCTTC 338 409 157 Antisense
TATTTTCTTCCTAGGTTCCACTGAT 414 663 183 Antisense
AGGTTCCACTGATTACGGTACTTAT 563 57 195 Antisense
CAATTGCTTTCAGTATGGCTACCGC 293 179 229 Antisense
Sequence Source Affymetrix Proprietary Database