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[175491_at]

Description AV200593_rc /REP_DB=TREMBL Accession /GB=AV200593 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk577f10 : 3prime end, single read.
Cluster 6grp_total > 84      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.2
(-3)
A 		2.9
(-1.9)
A 		3.7
(-0.6)
A 		5.9
(3)
A 		4
B 2.6
(-3)
A 		4.6
(0.2)
A 		6.4
(3)
A 		3
(-2.4)
A 		4
C 3.9
(-1.7)
A 		2.9
(-3)
A 		6.2
(1.4)
A 		7.4
(3)
A 		5
avr 2.9
(-3) 		3.5
(-1.6) 		5.4
(3) 		5.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.9
(-2.1)
A 		2
(-3)
A 		3.5
(-2.3)
A 		2.1
(-3)
A 		7.9
(-0.1)
A 		14.4
(3)
A 		12
B 2.7
(-2.3)
A 		2.2
(-2.6)
A 		1.4
(-3)
A 		12.9
(3)
A 		6.7
(-0.2)
A 		2.2
(-2.6)
A 		12
C 1.2
(-3)
A 		2.7
(-2.1)
A 		3.6
(-1.5)
A 		11.1
(3)
A 		6.5
(0.2)
A 		3
(-1.9)
A 		10
avr 2.6
(-2.7) 		2.3
(-3) 		2.8
(-2.5) 		8.7
(3) 		7
(1.4) 		6.5
(0.9) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.8
(0)
A 		0.6
(-3)
A 		1
(3)
A 		0.9
(1.5)
A 		0
B 0.8
(-1.7)
A 		1.1
(0.3)
A 		1.5
(3)
A 		0.6
(-3)
A 		1
C 1.3
(-0.7)
A 		0.8
(-3)
A 		2.1
(3)
A 		1.2
(-1.2)
A 		1
avr 1
(-1.3) 		0.8
(-3) 		1.5
(3) 		0.9
(-2.1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.7
(-2.6)
A 		0.7
(-2.6)
A 		0.8
(-2.4)
A 		0.5
(-3)
A 		2.4
(0.8)
A 		3.5
(3)
A 		3
B 0.9
(-1.8)
A 		0.7
(-2.2)
A 		0.3
(-3)
A 		3.4
(3)
A 		2.7
(1.6)
A 		0.8
(-2)
A 		3
C 0.5
(-3)
A 		0.8
(-1.9)
A 		0.9
(-1.6)
A 		2.2
(3)
A 		2.1
(2.6)
A 		1
(-1.2)
A 		2
avr 0.7
(-3) 		0.7
(-3) 		0.7
(-3) 		2
(1.6) 		2.4
(3) 		1.8
(0.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20804
Sequence Type Exemplar sequence
Representative Public ID AV200593 NCBI
Target Description AV200593_rc /REP_DB=TREMBL Accession /GB=AV200593 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk577f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061511(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061511 NCBI Caenorhabditis elegans T13B5.9 (T13B5.9) mRNA, complete cds. 11/11 None
GENEFINDER00000003634 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1101451:1104490:-1 11/11 None
T13B5.9 ENSEMBL cdna:known chromosome:CEL140:II:1101451:1104442:-1 gene:T13B5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1101448-1101866(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13B5.9
Entrez Gene 173494 Entrez gene
WormBase CE39032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77634 Hypothetical protein T13B5.9 [Caenorhabditis elegans] ref|NP_493912.2| T13B5.9 [Caenorhabditis elegans] 0.0
blast CAE62988 Hypothetical protein CBG07216 [Caenorhabditis briggsae] 1.0E-81
blast CAE59938 Hypothetical protein CBG03424 [Caenorhabditis briggsae] 2.0E-36
blast CAE59938 Hypothetical protein CBG03424 [Caenorhabditis briggsae] 9.0E-26
Sequence
Target Sequence 
>C. ELEGANS:175491_AT
ggctgtgaattcctcgaaaactcctgcgaagactttctgaaaatcgctgaaaaacacaag
atcggcttgaaattggcccctttctgtcggaaatctctatgctacaaactgcccggaaat
gcacaaattttcaaattcactgataaaaactgcgaaaatcgacgagtcatcggtgataat
cagaaatggtgtcccatggcgaagaacctcccgttaaactatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGTGAATTCCTCGAAAACTCCT 531 539 38 Antisense
AAAACTCCTGCGAAGACTTTCTGAA 443 131 54 Antisense
TCGCTGAAAAACACAAGATCGGCTT 583 593 81 Antisense
AGATCGGCTTGAAATTGGCCCCTTT 266 67 96 Antisense
CCCCTTTCTGTCGGAAATCTCTATG 551 261 114 Antisense
AATCTCTATGCTACAAACTGCCCGG 119 171 129 Antisense
AACTGCCCGGAAATGCACAAATTTT 475 139 144 Antisense
GCGAAAATCGACGAGTCATCGGTGA 500 287 189 Antisense
GGTGATAATCAGAAATGGTGTCCCA 228 501 209 Antisense
ATGGTGTCCCATGGCGAAGAACCTC 380 51 223 Antisense
GCGAAGAACCTCCCGTTAAACTATG 404 285 236 Antisense
Sequence Source Affymetrix Proprietary Database