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[175490_at]

Description AV199200_rc /REP_DB=TREMBL Accession /GB=AV199200 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 47      6grp_total > 18      4grp_total > 21      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4053
1 2 3 4 range
A 4603
(1)
P 		2616
(-2.6)
P 		2374.2
(-3)
P 		5750.5
(3)
P 		3376
B 4169
(0.3)
P 		3233.6
(-1.2)
P 		2069.6
(-3)
P 		5927
(3)
P 		3857
C 3840.5
(0.2)
P 		3297
(-0.7)
P 		1874.1
(-3)
P 		5582
(3)
P 		3708
avr 4204.2
(0.5) 		3048.9
(-1.4) 		2106
(-3) 		5753.2
(3) 		3647

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2462
1 2 3 4 5 6 range
A 5046.5
(3)
P 		3400.4
(-1)
P 		2584.2
(-3)
P 		2762.6
(-2.6)
P 		3674
(-0.3)
P 		3322.5
(-1.2)
P 		2462
B 4215.2
(3)
P 		3501.5
(0.2)
P 		3284.8
(-0.7)
P 		3560
(0.4)
P 		2711.5
(-3)
P 		2806.8
(-2.6)
P 		1504
C 3986.3
(3)
P 		3401.6
(-0.2)
P 		3444.1
(0)
P 		3674.6
(1.3)
P 		3068.8
(-2.1)
P 		2896.9
(-3)
P 		1089
avr 4416
(3) 		3434.5
(-1.2) 		3104.4
(-2.6) 		3332.4
(-1.6) 		3151.4
(-2.4) 		3008.7
(-3) 		1407
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1196
1 2 3 4 range
A 1675.9
(3)
P 		567.9
(-3)
P 		620.7
(-2.7)
P 		841.8
(-1.5)
P 		1108
B 1329.5
(3)
P 		798.6
(-0.7)
P 		479.6
(-3)
P 		1263
(2.5)
P 		850
C 1271.3
(3)
P 		947.9
(-0.1)
P 		653.2
(-3)
P 		941.2
(-0.2)
P 		618
avr 1425.6
(3) 		771.5
(-1.7) 		584.5
(-3) 		1015.3
(0.1) 		841

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 915
1 2 3 4 5 6 range
A 930.3
(0.4)
P 		1209.4
(3)
P 		562.8
(-3)
P 		700.7
(-1.7)
P 		1108.6
(2.1)
P 		808.9
(-0.7)
P 		647
B 1466.7
(3)
P 		1165.5
(0.3)
P 		797.7
(-3)
P 		942.9
(-1.7)
P 		1101.6
(-0.3)
P 		1046.6
(-0.8)
P 		669
C 1477.6
(3)
P 		1037.9
(-0.6)
P 		876.6
(-1.9)
P 		739
(-3)
P 		993
(-0.9)
P 		969.8
(-1.1)
P 		739
avr 1291.5
(3) 		1137.6
(1.3) 		745.7
(-3) 		794.2
(-2.5) 		1067.7
(0.5) 		941.8
(-0.8) 		546
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21670
Sequence Type Exemplar sequence
Representative Public ID AV199200 NCBI
Target Description AV199200_rc /REP_DB=TREMBL Accession /GB=AV199200 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV199200
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV199200 AV199200_rc /REP_DB=TREMBL Accession /GB=AV199200 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk542c10 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6223917-6224207(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175490_AT
gtttgtgagtgagtgtgctccaaattggagcctcgcgtatgaacggtgtcctttttcatt
tttattcgactttcccctcctcatcttttgtactgttcttcttctacattctcctttcaa
tcattcttttccaatctacaaacccgatcaactcagtgtgctttttgccgatttttctct
ctcgattgtgtcgataatttatgtatttttgcttcatttcaaccttcccccgacagataa
tatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTGAGTGAGTGTGCTCCAAAT 611 451 14 Antisense
CTCCAAATTGGAGCCTCGCGTATGA 121 229 31 Antisense
AGCCTCGCGTATGAACGGTGTCCTT 7 83 42 Antisense
TCATCTTTTGTACTGTTCTTCTTCT 386 621 94 Antisense
TACATTCTCCTTTCAATCATTCTTT 296 645 118 Antisense
CATTCTTTTCCAATCTACAAACCCG 415 215 135 Antisense
AAACCCGATCAACTCAGTGTGCTTT 330 125 153 Antisense
AGTGTGCTTTTTGCCGATTTTTCTC 142 59 168 Antisense
GATTTTTCTCTCTCGATTGTGTCGA 335 429 183 Antisense
TATTTTTGCTTCATTTCAACCTTCC 244 663 217 Antisense
AACCTTCCCCCGACAGATAATATAT 180 147 234 Antisense
Sequence Source Affymetrix Proprietary Database