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[175489_at]

Description AV183046_rc /REP_DB=TREMBL Accession /GB=AV183046 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk645h12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_high_8_8 > 55      6grp_highest_nonorm > 55      6grp_total > 83      4grp_total > 48      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1055
1 2 3 4 range
A 83.6
(-3)
P 		773.9
(1.5)
P 		1012.8
(3)
P 		182.1
(-2.4)
P 		929
B 43.8
(-3)
A 		576.3
(0)
P 		1098.8
(3)
P 		273.2
(-1.7)
P 		1055
C 66.1
(-3)
A 		635.9
(0.8)
P 		970.5
(3)
P 		235.4
(-1.9)
P 		904
avr 64.5
(-3) 		662
(0.7) 		1027.4
(3) 		230.2
(-2) 		963

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3563
1 2 3 4 5 6 range
A 211.2
(-3)
P 		1364.9
(-0.7)
P 		1047
(-1.3)
P 		2525.8
(1.7)
P 		3183.8
(3)
P 		1322.3
(-0.8)
P 		2973
B 241.7
(-3)
P 		1597.1
(-0.7)
P 		1477
(-0.9)
P 		2445.1
(0.7)
P 		3774.3
(3)
P 		1512.8
(-0.8)
P 		3533
C 312.9
(-3)
P 		1476.6
(-0.4)
P 		1240
(-0.9)
P 		1996.5
(0.8)
P 		2989.1
(3)
P 		1416.3
(-0.5)
P 		2676
avr 255.3
(-3) 		1479.5
(-0.6) 		1254.7
(-1) 		2322.5
(1.1) 		3315.7
(3) 		1417.1
(-0.7) 		3060
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 30.4
(-2.9)
P 		168
(0.6)
P 		264.8
(3)
P 		26.7
(-3)
P 		238
B 14
(-3)
A 		142.3
(0.2)
P 		254.6
(3)
P 		58.2
(-1.9)
P 		241
C 21.9
(-3)
A 		182.8
(0.1)
P 		338.3
(3)
P 		39.7
(-2.7)
P 		316
avr 22.1
(-3) 		164.4
(0.2) 		285.9
(3) 		41.5
(-2.6) 		264

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1495
1 2 3 4 5 6 range
A 38.9
(-3)
P 		485.4
(-0.1)
P 		228
(-1.8)
P 		640.6
(0.9)
P 		960.7
(3)
P 		321.9
(-1.2)
P 		922
B 84.1
(-3)
P 		531.6
(-1.1)
P 		358.7
(-1.9)
P 		647.6
(-0.7)
P 		1533.5
(3)
P 		564.1
(-1)
P 		1449
C 116
(-3)
P 		450.5
(-0.6)
P 		315.6
(-1.6)
P 		401.5
(-1)
P 		967.2
(3)
P 		474.1
(-0.5)
P 		851
avr 79.7
(-3) 		489.2
(-0.7) 		300.8
(-1.8) 		563.2
(-0.3) 		1153.8
(3) 		453.4
(-0.9) 		1074
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175489_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21792
Sequence Type Exemplar sequence
Representative Public ID AV183046 NCBI
Target Description AV183046_rc /REP_DB=TREMBL Accession /GB=AV183046 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk645h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028645(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028645 NCBI Caenorhabditis elegans F18E3.11 (F18E3.11) mRNA, complete cds. 11/11 None
SNAP00000036718 ENSEMBL cdna:SNAP chromosome:CEL140:V:7416074:7416346:1 11/11 None
F18E3.11 ENSEMBL cdna:known chromosome:CEL140:V:7416074:7416464:1 gene:F18E3.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036726 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7416082-7416362(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18E3.11
Entrez Gene 259628 Entrez gene
SwissProt Q6LCK7 EMBL-EBI
WormBase CE36537 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023816 F18E3.11 [Caenorhabditis elegans] gb|AAS80341.1| Hypothetical protein F18E3.11 [Caenorhabditis elegans] 7.0E-38
blast CAE70422 Hypothetical protein CBG16996 [Caenorhabditis briggsae] 1.0E-14
blast CAE70421 Hypothetical protein CBG16995 [Caenorhabditis briggsae] 6.0E-13
Sequence
Target Sequence 
>C. ELEGANS:175489_AT
aatcgtctctgaattctctggattccaacaccttcatacttctgcttcgtcttcatcaat
ttccactactcaagtggtttcaagaaaatcatcaacatcatcagatgctccccgtcattc
tctaaacattacagtaggagaagccgaaatgtgtcagattaccagaaacaacagttctaa
tagtctcaatgacttcaactgcctccaacggaaaaactcatcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGTCTCTGAATTCTCTGGATTC 480 169 31 Antisense
TCTCTGGATTCCAACACCTTCATAC 463 611 45 Antisense
CTTCATCAATTTCCACTACTCAAGT 300 221 81 Antisense
ACTACTCAAGTGGTTTCAAGAAAAT 118 101 95 Antisense
TCCCCGTCATTCTCTAAACATTACA 390 597 139 Antisense
GAAGCCGAAATGTGTCAGATTACCA 16 345 170 Antisense
GTGTCAGATTACCAGAAACAACAGT 240 485 181 Antisense
GAAACAACAGTTCTAATAGTCTCAA 403 353 195 Antisense
CTAATAGTCTCAATGACTTCAACTG 529 223 207 Antisense
TTCAACTGCCTCCAACGGAAAAACT 694 681 224 Antisense
GCCTCCAACGGAAAAACTCATCAGC 5 281 231 Antisense
Sequence Source Affymetrix Proprietary Database