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[175487_s_at]

Description AV178179_rc /REP_DB=TREMBL Accession /GB=AV178179 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 10      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 90      6grp_total > 50      4grp_total > 39      6grp_highest_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 129.6
(3)
P 		70.3
(-2.9)
P 		68.8
(-3)
P 		129.5
(3)
P 		61
B 198
(3)
P 		89.7
(-3)
P 		105.3
(-2.1)
P 		105
(-2.2)
P 		108
C 176.2
(3)
P 		60.4
(-3)
P 		101.1
(-0.9)
P 		96.2
(-1.1)
P 		116
avr 167.9
(3) 		73.5
(-3) 		91.7
(-1.8) 		110.2
(-0.7) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 220.4
(3)
P 		140.6
(-1.2)
P 		172.8
(0.5)
P 		152.5
(-0.6)
P 		105.8
(-3)
P 		112.7
(-2.6)
P 		115
B 141.1
(-2.3)
P 		141.4
(-2.2)
P 		196.6
(0.3)
P 		256.9
(3)
P 		124.7
(-3)
P 		154
(-1.7)
P 		132
C 148.5
(1.7)
P 		146.7
(1.5)
P 		146.4
(1.5)
P 		163
(3)
P 		157.7
(2.5)
P 		96.1
(-3)
P 		67
avr 170
(1.2) 		142.9
(-1.1) 		171.9
(1.4) 		190.8
(3) 		129.4
(-2.3) 		120.9
(-3) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 47.2
(3)
P 		15.3
(-3)
P 		18
(-2.5)
P 		19
(-2.3)
P 		32
B 63.1
(3)
P 		22.2
(-3)
P 		24.4
(-2.7)
P 		22.4
(-3)
P 		41
C 58.3
(3)
P 		17.4
(-2.8)
P 		35.2
(-0.3)
P 		16.2
(-3)
P 		42
avr 56.2
(3) 		18.3
(-3) 		25.9
(-1.8) 		19.2
(-2.9) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 40.6
(0.5)
P 		50
(3)
P 		37.6
(-0.3)
P 		38.7
(0)
P 		31.9
(-1.8)
P 		27.4
(-3)
P 		23
B 49.1
(-2.4)
P 		47.1
(-3)
P 		47.7
(-2.8)
P 		68
(3)
P 		50.7
(-2)
P 		57.4
(-0)
P 		21
C 55
(3)
P 		44.8
(0.3)
P 		37.3
(-1.7)
P 		32.8
(-2.8)
P 		51
(1.9)
P 		32.2
(-3)
P 		23
avr 48.2
(3) 		47.3
(2.4) 		40.9
(-1.8) 		46.5
(1.9) 		44.5
(0.6) 		39
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175487_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21301
Sequence Type Exemplar sequence
Representative Public ID AV178179 NCBI
Target Description AV178179_rc /REP_DB=TREMBL Accession /GB=AV178179 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069807 NCBI Caenorhabditis elegans ZK792.8 (ZK792.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000023879 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11666302:11675428:1 11/11 None
ZK792.8 ENSEMBL cdna:known chromosome:CEL140:IV:11668005:11671460:1 gene:ZK792.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023869 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11670833-11671400(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK792.8
Entrez Gene 3565022 Entrez gene
SwissProt Q9U1N6 EMBL-EBI
WormBase CE24740 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1593220_AT similar to APG4 autophagy 4 homolog C cfa
CANINE_2:CFA.19031.1.S1_S_AT similar to APG4 autophagy 4 homolog C cfa
CANINE_2:CFA.19884.1.S1_AT similar to APG4 autophagy 4 homolog C cfa
CANINE_2:CFAAFFX.28602.1.S1_AT similar to APG4 autophagy 4 homolog C cfa
CANINE_2:CFAAFFX.28602.1.S1_S_AT similar to APG4 autophagy 4 homolog C cfa
CHICKEN:GGAAFFX.6952.1.S1_AT similar to APG4 autophagy 4 homolog C; autophagin-3; AUT-like 1, cysteine endopeptidase (S. cerevisiae); AUT (S. cerevisiae)-like 1, cysteine endopeptidase; AUT-like 1, cysteine endopeptidase (S. cerevisiae) gga
HU35KSUBC:RC_AA236684_AT ATG4 autophagy related 4 homolog C (S. cerevisiae) hs
HG-U95C:63560_AT ATG4 autophagy related 4 homolog C (S. cerevisiae) hs
MG-U74CV2:136769_F_AT autophagy-related 4C (yeast) mm
MG-U74CV2:136770_R_AT autophagy-related 4C (yeast) mm
MOE430B:1434014_AT autophagy-related 4C (yeast) mm
MOUSE430_2:1434014_AT autophagy-related 4C (yeast) mm
MOE430B:1441440_AT Autophagy-related 4C-like (yeast), mRNA (cDNA clone MGC:67363 IMAGE:6827140) mm
MOUSE430_2:1441440_AT Autophagy-related 4C-like (yeast), mRNA (cDNA clone MGC:67363 IMAGE:6827140) mm
MOE430B:1440800_AT Autophagy-related 4C-like (yeast), mRNA (cDNA clone MGC:67363 IMAGE:6827140) mm
MOUSE430_2:1440800_AT Autophagy-related 4C-like (yeast), mRNA (cDNA clone MGC:67363 IMAGE:6827140) mm
Protein Similarities
Method ID Description E-Value
blast CAB54515 Hypothetical protein ZK792.8 [Caenorhabditis elegans] ref|NP_502208.1| ZK792.8 [Caenorhabditis elegans] 0.0
blast T27993 hypothetical protein ZK792.2 - Caenorhabditis elegans 0.0
blast CAA92644 Hypothetical protein ZK792.1a [Caenorhabditis elegans] emb|CAA92636.2| Hypothetical protein ZK792.1a [Caenorhabditis elegans] ref|NP_502206.1| ZK792.1a [Caenorhabditis elegans] 0.0
blast CAE62074 Hypothetical protein CBG06097 [Caenorhabditis briggsae] 1.0E-161
blast XP_786847 PREDICTED: similar to APG4-D protein [Strongylocentrotus purpuratus] 1.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR005078 EMBL-EBI Peptidase C54 1.0E-126
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Pfam IPR005078 EMBL-EBI Peptidase C54 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023879 5 1086-1108,1165-1187,1248-1270,1277-1299,1335-1357
Sequence
Target Sequence 
>C. ELEGANS:175487_S_AT
tgatatggatccatcatgtgccctgtgctttcaatttgaatcacgggaacaatttgataa
tgatatgagacaattgaatttgttcattgacatcgatcaaggcgaggaacatggaatgaa
acgagtacgagatcccatgtttagtgtggtttatggagaaagacgtcaacctccaagtta
tgaacgtgaagtctctgaaacagaacaagcacaagcggacaagcacggattcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATATGGATCCATCATGTGCCCTG 257 565 21 Antisense
TCATGTGCCCTGTGCTTTCAATTTG 106 623 34 Antisense
GCTTTCAATTTGAATCACGGGAACA 231 305 47 Antisense
TTCATTGACATCGATCAAGGCGAGG 169 687 103 Antisense
CGATCAAGGCGAGGAACATGGAATG 310 249 114 Antisense
ACGAGTACGAGATCCCATGTTTAGT 196 91 141 Antisense
GATCCCATGTTTAGTGTGGTTTATG 297 417 151 Antisense
GAAAGACGTCAACCTCCAAGTTATG 622 357 178 Antisense
TATGAACGTGAAGTCTCTGAAACAG 446 657 199 Antisense
GAAACAGAACAAGCACAAGCGGACA 687 355 217 Antisense
CAAGCGGACAAGCACGGATTCGAGA 598 183 232 Antisense
Sequence Source Affymetrix Proprietary Database