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[175486_at]

Description AU116455_rc /REP_DB=TREMBL Accession /GB=AU116455 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk744h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 90      6grp_total > 07      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 115.3
(0.3)
P 		88.1
(-2.1)
P 		78.3
(-3)
P 		145.2
(3)
P 		67
B 145.7
(3)
P 		41.9
(-3)
P 		56.4
(-2.2)
P 		98.1
(0.2)
P 		104
C 167.2
(3)
P 		51.5
(-3)
P 		83.8
(-1.3)
P 		145.5
(1.9)
P 		116
avr 142.7
(3) 		60.5
(-3) 		72.8
(-2.1) 		129.6
(2) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 82.7
(-0.3)
P 		98.6
(2.4)
P 		102.3
(3)
P 		69.1
(-2.6)
P 		66.9
(-3)
P 		84.6
(-0)
P 		35
B 100.6
(0.8)
P 		86.4
(-1.8)
P 		86.8
(-1.7)
P 		112.4
(3)
P 		89.8
(-1.2)
P 		80
(-3)
P 		32
C 163.9
(3)
P 		87.6
(-0.8)
P 		43.3
(-3)
P 		53.9
(-2.5)
P 		77.4
(-1.3)
P 		60.6
(-2.1)
P 		121
avr 115.7
(3) 		90.9
(-0.7) 		77.5
(-2.6) 		78.5
(-2.5) 		78
(-2.6) 		75.1
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 42
(3)
P 		19.1
(-3)
P 		20.5
(-2.6)
P 		21.2
(-2.4)
P 		23
B 46.5
(3)
P 		10.3
(-3)
P 		13.1
(-2.5)
P 		20.9
(-1.2)
P 		36
C 55.3
(3)
P 		14.8
(-3)
P 		29.2
(-0.9)
P 		24.5
(-1.6)
P 		41
avr 47.9
(3) 		14.7
(-3) 		20.9
(-1.9) 		22.2
(-1.6) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 15.3
(-3)
P 		35.1
(3)
P 		22.3
(-0.9)
P 		17.5
(-2.3)
P 		20.2
(-1.5)
P 		20.6
(-1.4)
P 		20
B 35
(2.4)
P 		28.8
(0)
P 		21.1
(-3)
P 		29.8
(0.4)
P 		36.5
(3)
P 		29.8
(0.4)
P 		15
C 60.7
(3)
P 		26.7
(-1.1)
P 		11
(-3)
P 		10.8
(-3)
P 		25.1
(-1.3)
P 		20.3
(-1.9)
P 		50
avr 37
(3) 		30.2
(0.8) 		18.1
(-3) 		19.4
(-2.6) 		27.3
(-0.1) 		23.6
(-1.3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175486_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21725
Sequence Type Exemplar sequence
Representative Public ID AU116455 NCBI
Target Description AU116455_rc /REP_DB=TREMBL Accession /GB=AU116455 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk744h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU116455
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU116455 AU116455_rc /REP_DB=TREMBL Accession /GB=AU116455 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk744h11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9558683-9558962(-) 75.99 100.0
Sequence
Target Sequence 
>C. ELEGANS:175486_AT
tatgttgcgcaatacgccttctcaggatttagtgttctcgtaatatgagagtacaatatt
aagtttattcttctcatctatttttcttcaaattaatgcatacgagtattttttcctgca
aaatgcgattcattttttaaccatatcactcaatttctcaaatttatttgttttttcttt
cagtacattccctcacaattcgagcttgcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGTTGCGCAATACGCCTTCTCAG 78 657 35 Antisense
CGCCTTCTCAGGATTTAGTGTTCTC 35 257 49 Antisense
AGGATTTAGTGTTCTCGTAATATGA 420 53 58 Antisense
TTAAGTTTATTCTTCTCATCTATTT 312 685 93 Antisense
TTTTTCTTCAAATTAATGCATACGA 393 675 115 Antisense
GCATACGAGTATTTTTTCCTGCAAA 188 307 132 Antisense
TTTTTCCTGCAAAATGCGATTCATT 388 673 144 Antisense
GCGATTCATTTTTTAACCATATCAC 313 289 159 Antisense
TTTAACCATATCACTCAATTTCTCA 402 673 170 Antisense
TCAGTACATTCCCTCACAATTCGAG 664 623 214 Antisense
TTCCCTCACAATTCGAGCTTGCTTT 616 697 222 Antisense
Sequence Source Affymetrix Proprietary Database