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[175485_at]

Description AU116313_rc /REP_DB=TREMBL Accession /GB=AU116313 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk743c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 67      6grp_total > 58      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 751
1 2 3 4 range
A 1366.9
(-1.7)
P 		1471.4
(-0.9)
P 		1208.4
(-3)
P 		1951.3
(3)
P 		743
B 1622.2
(2.3)
P 		1327.9
(-1.4)
P 		1200
(-3)
P 		1674.6
(3)
P 		475
C 1496.8
(3)
P 		1248.7
(-3)
P 		1274.3
(-2.4)
P 		1334.2
(-0.9)
P 		248
avr 1495.3
(0.8) 		1349.3
(-1.3) 		1227.6
(-3) 		1653.4
(3) 		426

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 931
1 2 3 4 5 6 range
A 2158.9
(3)
P 		1242.4
(-3)
P 		1437
(-1.7)
P 		1416.6
(-1.9)
P 		1598.6
(-0.7)
P 		1889.7
(1.2)
P 		917
B 1909.9
(2)
P 		1444.6
(-2)
P 		1476.4
(-1.7)
P 		1977.3
(2.5)
P 		1322.7
(-3)
P 		2033
(3)
P 		710
C 1382.2
(-3)
P 		1546.5
(-1.8)
P 		1436.6
(-2.6)
P 		2173.5
(3)
P 		1398.1
(-2.9)
P 		1804.4
(0.2)
P 		791
avr 1817
(1.9) 		1411.2
(-3) 		1450
(-2.5) 		1855.8
(2.4) 		1439.8
(-2.7) 		1909
(3) 		498
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 292
1 2 3 4 range
A 497.7
(3)
P 		319.4
(-2)
P 		315.9
(-2.1)
P 		285.6
(-3)
P 		212
B 517.3
(3)
P 		328
(-1.7)
P 		278.1
(-3)
P 		356.9
(-1)
P 		239
C 495.5
(3)
P 		359
(-0)
P 		444.1
(1.9)
P 		225
(-3)
P 		271
avr 503.5
(3) 		335.5
(-1.7) 		346
(-1.4) 		289.2
(-3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 445
1 2 3 4 5 6 range
A 398
(0)
P 		441.9
(1.6)
P 		312.9
(-3)
P 		359.3
(-1.4)
P 		482.4
(3)
P 		460.1
(2.2)
P 		170
B 664.6
(1.6)
P 		480.9
(-1.2)
P 		358.5
(-3)
P 		523.7
(-0.5)
P 		537.4
(-0.3)
P 		758.1
(3)
P 		400
C 512.3
(0.7)
P 		471.9
(-0.3)
P 		365.6
(-3)
P 		437.1
(-1.2)
P 		452.4
(-0.8)
P 		604
(3)
P 		238
avr 525
(1.1) 		464.9
(-0.3) 		345.7
(-3) 		440
(-0.8) 		490.7
(0.3) 		607.4
(3) 		262
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21295
Sequence Type Exemplar sequence
Representative Public ID AU116313 NCBI
Target Description AU116313_rc /REP_DB=TREMBL Accession /GB=AU116313 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk743c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C27B7.8 ENSEMBL cdna:known chromosome:CEL140:IV:8916299:8918872:-1 gene:C27B7.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019253 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8916314-8916596(-) 89.36 100.0
Public Domain and Genome References
Ensembl C27B7.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90983 Hypothetical protein C27B7.8 [Caenorhabditis elegans] ref|NP_501549.1| RAP homolog (vertebrate Rap GTPase family) family member (rap-1) [Caenorhabditis elegans] emb|CAE74068.1| Hypothetical protein CBG21720 [Caenorhabditis briggsae] 1.0E-103
blast XP_396692 PREDICTED: similar to ENSANGP00000020068 [Apis mellifera] 7.0E-86
blast XP_785316 PREDICTED: similar to RAS related protein 1b [Strongylocentrotus purpuratus] 1.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 2.1E-94
Sequence
Target Sequence 
>C. ELEGANS:175485_AT
cattcttcctaattttgcatgaaaaccccgtttaaccagtgtgccttctcaattgaagtt
tccagttatttacattcaaaaaacataatatcccacgaaaacgccgtcgaaaattccaat
tttttgaaacattttgtcccccaaatgaggcatatctttgatcctccaacatcatttctc
gtttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCTTCCTAATTTTGCATGAAAA 462 215 14 Antisense
GCATGAAAACCCCGTTTAACCAGTG 403 285 30 Antisense
TTAACCAGTGTGCCTTCTCAATTGA 649 683 45 Antisense
GTGCCTTCTCAATTGAAGTTTCCAG 438 477 54 Antisense
TCAATTGAAGTTTCCAGTTATTTAC 539 633 62 Antisense
TAATATCCCACGAAAACGCCGTCGA 368 627 99 Antisense
TTTGAAACATTTTGTCCCCCAAATG 596 667 136 Antisense
TTGTCCCCCAAATGAGGCATATCTT 85 701 147 Antisense
AGGCATATCTTTGATCCTCCAACAT 644 53 161 Antisense
ATCTTTGATCCTCCAACATCATTTC 681 31 167 Antisense
TCCTCCAACATCATTTCTCGTTTTA 250 593 175 Antisense
Sequence Source Affymetrix Proprietary Database