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[175483_at]

Description AV185101_rc /REP_DB=TREMBL Accession /GB=AV185101 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk673f11 : 3prime end, single read.
Cluster 4grp_high_8_8 > 15      6grp_total > 28      4grp_total > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 93.4
(-3)
P 		139.9
(1.9)
P 		123
(0.1)
P 		150.3
(3)
M 		57
B 120.6
(-1.1)
P 		77
(-3)
P 		87.8
(-2.5)
A 		217.9
(3)
P 		141
C 97.3
(-3)
P 		102.2
(-2.4)
P 		110.4
(-1.5)
P 		148.9
(3)
P 		52
avr 103.8
(-3) 		106.4
(-2.8) 		107.1
(-2.7) 		172.4
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 196.1
(3)
P 		104.9
(-1.6)
P 		87
(-2.5)
A 		81.4
(-2.8)
A 		77.7
(-3)
P 		99.3
(-1.9)
P 		118
B 133.5
(3)
P 		87
(-0.4)
P 		52.2
(-3)
A 		61.3
(-2.3)
A 		111.4
(1.4)
P 		93.8
(0.1)
P 		81
C 193.1
(3)
P 		84.5
(-2.5)
P 		74.3
(-3)
M 		74
(-3)
A 		113.6
(-1)
P 		84
(-2.5)
P 		119
avr 174.2
(3) 		92.1
(-1.8) 		71.2
(-3) 		72.2
(-2.9) 		100.9
(-1.3) 		92.4
(-1.8) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 34
(3)
P 		30.4
(1.2)
P 		32.1
(2.1)
P 		22
(-3)
M 		12
B 38.5
(1.3)
P 		19
(-3)
P 		20.3
(-2.7)
A 		46.4
(3)
P 		27
C 32.2
(0.2)
P 		29.4
(-1.1)
P 		38.5
(3)
P 		25.1
(-3)
P 		13
avr 34.9
(3) 		26.3
(-3) 		30.3
(-0.2) 		31.2
(0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 36.1
(2.6)
P 		37.3
(3)
P 		18.9
(-3)
A 		20.7
(-2.4)
A 		23.4
(-1.5)
P 		24.2
(-1.3)
P 		18
B 46.5
(3)
P 		29
(-0.1)
P 		12.7
(-3)
A 		16.2
(-2.4)
A 		45.2
(2.8)
P 		35
(1)
P 		34
C 71.6
(3)
P 		25.8
(-1.8)
P 		18.9
(-2.6)
M 		14.9
(-3)
A 		36.8
(-0.7)
P 		28.1
(-1.6)
P 		57
avr 51.4
(3) 		30.7
(-0.6) 		16.8
(-3) 		17.3
(-2.9) 		35.1
(0.2) 		29.1
(-0.9) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21087
Sequence Type Exemplar sequence
Representative Public ID AV185101 NCBI
Target Description AV185101_rc /REP_DB=TREMBL Accession /GB=AV185101 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk673f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y53G8B.4 ENSEMBL cdna:known chromosome:CEL140:III:3112419:3127107:-1 gene:Y53G8B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3112486-3112766(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y53G8B.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60757 Hypothetical protein Y53G8B.4 [Caenorhabditis elegans] ref|NP_497661.2| Y53G8B.4 [Caenorhabditis elegans] 0.0
blast CAE72971 Hypothetical protein CBG20308 [Caenorhabditis briggsae] 1.0E-150
blast XP_625083 PREDICTED: similar to ENSANGP00000015795 [Apis mellifera] 5.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR008521 EMBL-EBI Protein of unknown function DUF803 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
Y53G8B.4 9 54-76,104-126,131-148,155-176,196-218,225-247,251-273,280-302,317-336
Sequence
Target Sequence 
>C. ELEGANS:175483_AT
tttgacttccaatttttgagtacgtgtagggggactattttgcaacaaaaaaaatgtccc
ccgatcctcacccagtttttgttctttttttcctcccatggctcaaaatttctcagaata
tccaattctcacttaccacaatcacccgcccgcccacacatccgaaatgttacaggtttc
tttctttcccaattttttccggaattttaagctccaattactgatggtatccccctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGACTTCCAATTTTTGAGTACGT 256 613 26 Antisense
TCCAATTTTTGAGTACGTGTAGGGG 335 587 33 Antisense
GTGTAGGGGGACTATTTTGCAACAA 369 483 49 Antisense
TGCAACAAAAAAAATGTCCCCCGAT 237 571 66 Antisense
TTCCTCCCATGGCTCAAAATTTCTC 252 699 115 Antisense
CTCCCATGGCTCAAAATTTCTCAGA 592 233 118 Antisense
GGCTCAAAATTTCTCAGAATATCCA 693 535 125 Antisense
GAATATCCAATTCTCACTTACCACA 677 325 141 Antisense
TCCGAAATGTTACAGGTTTCTTTCT 37 3 186 Antisense
TCCGGAATTTTAAGCTCCAATTACT 265 591 223 Antisense
TCCAATTACTGATGGTATCCCCCTC 123 587 238 Antisense
Sequence Source Affymetrix Proprietary Database