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[175482_at]

Description AU113550_rc /REP_DB=TREMBL Accession /GB=AU113550 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 97      6grp_total > 66      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2275
1 2 3 4 range
A 904.7
(-2.7)
P 		1083
(-2.2)
P 		795.8
(-3)
P 		2858.1
(3)
P 		2062
B 1497.5
(-0.7)
P 		785.4
(-3)
P 		1039.1
(-2.2)
P 		2635.2
(3)
P 		1850
C 1021.7
(-2.5)
P 		854
(-3)
P 		1298.1
(-1.8)
P 		3060
(3)
P 		2206
avr 1141.3
(-2.3) 		907.5
(-3) 		1044.3
(-2.6) 		2851.1
(3) 		1944

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1407
1 2 3 4 5 6 range
A 517.3
(-3)
P 		627.3
(-2.5)
P 		1001.2
(-0.8)
P 		865
(-1.4)
P 		802
(-1.7)
P 		1854.2
(3)
P 		1337
B 597.8
(-3)
P 		694.7
(-2.4)
P 		867.2
(-1.3)
P 		852.7
(-1.4)
P 		801.1
(-1.7)
P 		1526.3
(3)
P 		929
C 447.5
(-3)
P 		669
(-2)
P 		779.3
(-1.5)
P 		710
(-1.8)
P 		493.8
(-2.8)
P 		1798.6
(3)
P 		1351
avr 520.9
(-3) 		663.7
(-2.3) 		882.6
(-1.2) 		809.2
(-1.6) 		699
(-2.1) 		1726.4
(3) 		1206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 329.4
(0.5)
P 		235.1
(-2.2)
P 		208
(-3)
P 		418.4
(3)
P 		210
B 477.6
(1.6)
P 		194
(-3)
P 		240.8
(-2.2)
P 		561.6
(3)
P 		368
C 338.2
(-0.9)
P 		245.5
(-3)
P 		452.4
(1.6)
P 		516
(3)
P 		271
avr 381.7
(0.4) 		224.9
(-3) 		300.4
(-1.3) 		498.7
(3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 507
1 2 3 4 5 6 range
A 95.4
(-3)
P 		223.1
(-0.8)
P 		218
(-0.9)
P 		219.4
(-0.9)
P 		242
(-0.5)
P 		451.4
(3)
P 		356
B 208
(-3)
P 		231.2
(-2.6)
P 		210.6
(-3)
P 		225.8
(-2.7)
P 		325.5
(-1)
P 		569.1
(3)
P 		361
C 165.9
(-2.7)
P 		204.1
(-2.2)
P 		198.3
(-2.3)
P 		142.8
(-3)
P 		159.8
(-2.8)
P 		602.1
(3)
P 		459
avr 156.4
(-3) 		219.5
(-2) 		209
(-2.2) 		196
(-2.4) 		242.4
(-1.7) 		540.9
(3) 		385
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20953
Sequence Type Exemplar sequence
Representative Public ID AU113550 NCBI
Target Description AU113550_rc /REP_DB=TREMBL Accession /GB=AU113550 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk709a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065709(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065709 NCBI Caenorhabditis elegans C34E10.10 (C34E10.10) mRNA, complete cds. 11/11 None
SNAP00000034351 ENSEMBL cdna:SNAP chromosome:CEL140:III:5226854:5227838:-1 11/11 None
GENEFINDER00000034372 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5226858:5227838:-1 11/11 None
C34E10.10 ENSEMBL cdna:known chromosome:CEL140:III:5226773:5227646:-1 gene:C34E10.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5226861-5227189(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34E10.10
Entrez Gene 175715 Entrez gene
SwissProt Q95QS4 EMBL-EBI
WormBase CE27743 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:266903_AT expressed protein at
CANINE_2:CFAAFFX.2156.1.S1_AT similar to CG17652-PA cfa
DROSOPHILA_2:1630565_AT dm
DROSGENOME1:145597_AT dm
CHICKEN:GGA.11680.1.S1_S_AT similar to RIKEN cDNA D530033C11 gga
CHICKEN:GGAAFFX.24860.2.S1_AT similar to RIKEN cDNA D530033C11 gga
U133_X3P:HS.323662.0.A1_3P_S_AT chromosome 8 open reading frame 53 hs
HG-U133_PLUS_2:227402_S_AT chromosome 8 open reading frame 53 hs
HG-U133B:227402_S_AT chromosome 8 open reading frame 53 hs
HG-U95E:76765_AT chromosome 8 open reading frame 53 hs
HG-U95E:87767_AT chromosome 8 open reading frame 53 hs
HG-U133_PLUS_2:227836_AT Chromosome 8 open reading frame 53 hs
HG-U133B:227836_AT Chromosome 8 open reading frame 53 hs
HU35KSUBB:RC_AA227191_AT Chromosome 8 open reading frame 53 hs
U133_X3P:HS.86970.0.A1_3P_AT Chromosome 8 open reading frame 53 hs
U133_X3P:HS.280297.0.A1_3P_AT Chromosome 8 open reading frame 53 hs
HG-U133_PLUS_2:238561_S_AT Chromosome 8 open reading frame 53 hs
HG-U133B:238561_S_AT Chromosome 8 open reading frame 53 hs
HG-U133_PLUS_2:238562_AT Chromosome 8 open reading frame 53 hs
HG-U133B:238562_AT Chromosome 8 open reading frame 53 hs
HG-U95B:54620_AT Chromosome 8 open reading frame 53 hs
HG-U95C:66586_AT Chromosome 8 open reading frame 53 hs
MOUSE430_2:1447704_S_AT RIKEN cDNA D530033C11 gene mm
MOE430B:1447704_S_AT RIKEN cDNA D530033C11 gene mm
MOE430B:1429937_AT RIKEN cDNA D530033C11 gene mm
MOUSE430_2:1429937_AT RIKEN cDNA D530033C11 gene mm
MOE430B:1455259_A_AT RIKEN cDNA D530033C11 gene mm
MOUSE430_2:1455259_A_AT RIKEN cDNA D530033C11 gene mm
MG-U74BV2:105556_AT RIKEN cDNA D530033C11 gene (D530033C11Rik), mRNA mm
MOE430B:1435806_AT RIKEN cDNA D530033C11 gene (D530033C11Rik), mRNA mm
MOUSE430_2:1435806_AT RIKEN cDNA D530033C11 gene (D530033C11Rik), mRNA mm
MU19KSUBC:TC41483_AT RIKEN cDNA D530033C11 gene (D530033C11Rik), mRNA mm
RG-U34B:RC_AA964590_AT similar to RIKEN cDNA D530033C11 (predicted) rn
RG-U34C:RC_AA819374_AT similar to RIKEN cDNA D530033C11 (predicted) rn
RAE230B:1384858_A_AT similar to RIKEN cDNA D530033C11 (predicted) rn
RAT230_2:1384858_A_AT similar to RIKEN cDNA D530033C11 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAK67218 Hypothetical protein C34E10.10 [Caenorhabditis elegans] ref|NP_498110.1| C34E10.10 [Caenorhabditis elegans] 1.0E-103
blast CAE73665 Hypothetical protein CBG21174 [Caenorhabditis briggsae] 1.0E-102
blast AAK67218 Hypothetical protein C34E10.10 [Caenorhabditis elegans] ref|NP_498110.1| C34E10.10 [Caenorhabditis elegans] 1.0E-100
blast CAE73665 Hypothetical protein CBG21174 [Caenorhabditis briggsae] 3.0E-87
blast CAE73665 Hypothetical protein CBG21174 [Caenorhabditis briggsae] 6.0E-82
blast NP_001017816 hypothetical protein LOC550514 [Danio rerio] gb|AAH92802.1| Hypothetical protein LOC550514 [Danio rerio] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR006984 EMBL-EBI Protein of unknown function DUF652 9.0E-26
Pfam IPR006984 EMBL-EBI Protein of unknown function DUF652 9.0E-26
Pfam IPR006984 EMBL-EBI Protein of unknown function DUF652 9.0E-26
Sequence
Target Sequence 
>C. ELEGANS:175482_AT
gtacatcaaatttaagactgtgctacttgataatatttctgaagctacaaaggctggctg
ttctaaagaagaatccgaaatcaagaagctaaaggagttaaaaaatgcgctgatcggcca
acaagaattgaagaagaagaaaaagaaaaaaggagtcaatccattgtcgtgcaagaagaa
aattatgaaagcgtctgtggatatcgtcagaactggagagagaactgcttcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATCAAATTTAAGACTGTGCTA 517 459 18 Antisense
GACTGTGCTACTTGATAATATTTCT 632 375 33 Antisense
GAAGCTACAAAGGCTGGCTGTTCTA 159 343 58 Antisense
CAAAGGCTGGCTGTTCTAAAGAAGA 47 189 65 Antisense
AAAAATGCGCTGATCGGCCAACAAG 575 129 118 Antisense
TGCGCTGATCGGCCAACAAGAATTG 159 583 123 Antisense
AAAGGAGTCAATCCATTGTCGTGCA 631 121 166 Antisense
GTCAATCCATTGTCGTGCAAGAAGA 382 461 172 Antisense
TATGAAAGCGTCTGTGGATATCGTC 521 655 201 Antisense
GCGTCTGTGGATATCGTCAGAACTG 140 293 208 Antisense
GAACTGGAGAGAGAACTGCTTCAGG 269 349 227 Antisense
Sequence Source Affymetrix Proprietary Database