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[175480_at]

Description AU113402_rc /REP_DB=TREMBL Accession /GB=AU113402 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk707b10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 71      6grp_highest_nonorm > 90      6grp_total > 71      4grp_total > 36      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 73.6
(3)
A 		69.4
(2.4)
P 		28.7
(-3)
A 		64.8
(1.8)
A 		45
B 97.4
(2.6)
P 		100
(3)
A 		60.7
(-3)
A 		90.3
(1.5)
A 		39
C 95.6
(-0)
M 		128.6
(3)
P 		63.6
(-3)
A 		78.8
(-1.6)
P 		65
avr 88.9
(1.7) 		99.3
(3) 		51
(-3) 		78
(0.4) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 105.5
(-2.1)
P 		202.9
(3)
P 		186.6
(2.1)
P 		88.2
(-3)
P 		201.9
(2.9)
P 		143.9
(-0.1)
P 		115
B 132
(-0.4)
P 		89.3
(-3)
P 		171.5
(2)
P 		151.7
(0.8)
P 		187.8
(3)
P 		142.4
(0.2)
P 		99
C 188.3
(-0.3)
P 		144.9
(-1.4)
P 		125.3
(-1.8)
P 		328.9
(3)
P 		75.8
(-3)
P 		120.3
(-1.9)
P 		253
avr 141.9
(-2.3) 		145.7
(-1.9) 		161.1
(-0.2) 		189.6
(3) 		155.2
(-0.8) 		135.5
(-3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 26.8
(3)
A 		15.1
(-0.6)
P 		7.5
(-3)
A 		9.5
(-2.4)
A 		19
B 31.1
(3)
P 		24.7
(0.7)
A 		14.1
(-3)
A 		19.2
(-1.2)
A 		17
C 31.7
(1.7)
M 		37
(3)
P 		22.2
(-0.7)
A 		13.3
(-3)
P 		24
avr 29.9
(3) 		25.6
(1.4) 		14.6
(-2.8) 		14
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 19.5
(-3)
P 		72.2
(3)
P 		40.6
(-0.6)
P 		22.4
(-2.7)
P 		60.9
(1.7)
P 		35
(-1.2)
P 		53
B 45.9
(-0.9)
P 		29.7
(-3)
P 		41.6
(-1.5)
P 		40.2
(-1.6)
P 		76.3
(3)
P 		53.1
(0)
P 		47
C 69.8
(3)
P 		44.2
(-0.4)
P 		31.9
(-2)
P 		66.1
(2.5)
P 		24.5
(-3)
P 		40.3
(-0.9)
P 		45
avr 45.1
(-0.3) 		48.7
(1) 		38
(-3) 		42.9
(-1.2) 		53.9
(3) 		42.8
(-1.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20675
Sequence Type Exemplar sequence
Representative Public ID AU113402 NCBI
Target Description AU113402_rc /REP_DB=TREMBL Accession /GB=AU113402 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk707b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000005306 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5571272:5572292:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5571980-5572260(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31431 Hypothetical protein C17C3.15 [Caenorhabditis elegans] ref|NP_495078.1| C17C3.15 [Caenorhabditis elegans] 2.0E-80
blast T15540 hypothetical protein C17C3.1 - Caenorhabditis elegans 3.0E-65
blast AAF39881 Hypothetical protein H12I13.1 [Caenorhabditis elegans] ref|NP_495212.1| H12I13.1 [Caenorhabditis elegans] 5.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 1.1E-30
Sequence
Target Sequence 
>C. ELEGANS:175480_AT
gaaattttttcgattgagcaggttgaagaatttaaatttttttagtagttttgatctgat
accaaacttttgataatcaaaacctaaatttcctcttatgtcaaactgcacatctagatc
ttcacctcttatttttaccattttccaatttataacaactacatctatgtctacagtgta
cccattgatcactgaccacacttcctacatcgtcccatgtgttcgatactctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATTTTTTCGATTGAGCAGGTTG 665 351 22 Antisense
TTGATCTGATACCAAACTTTTGATA 315 703 72 Antisense
TCAAAACCTAAATTTCCTCTTATGT 598 627 98 Antisense
AATTTCCTCTTATGTCAAACTGCAC 39 175 108 Antisense
AAACTGCACATCTAGATCTTCACCT 592 127 124 Antisense
AGATCTTCACCTCTTATTTTTACCA 333 67 137 Antisense
CATTTTCCAATTTATAACAACTACA 615 215 160 Antisense
ACATCTATGTCTACAGTGTACCCAT 435 105 182 Antisense
GTCTACAGTGTACCCATTGATCACT 705 469 190 Antisense
TCCTACATCGTCCCATGTGTTCGAT 594 591 224 Antisense
ATCGTCCCATGTGTTCGATACTCTT 561 31 230 Antisense
Sequence Source Affymetrix Proprietary Database