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[175479_at]

Description AV181822_rc /REP_DB=TREMBL Accession /GB=AV181822 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk625c11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 81      6grp_total > 38      4grp_total > 14      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 315.7
(3)
P 		147.8
(-3)
P 		150.9
(-2.9)
P 		258.5
(1)
P 		168
B 227.4
(0.2)
P 		158.7
(-2.2)
P 		134.8
(-3)
P 		308.5
(3)
P 		174
C 219.5
(0.7)
P 		133.1
(-3)
P 		210.3
(0.3)
P 		274.3
(3)
P 		141
avr 254.2
(1.8) 		146.5
(-3) 		165.3
(-2.2) 		280.4
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 343.3
(3)
P 		245.9
(0.1)
P 		196.9
(-1.4)
P 		143.4
(-3)
P 		259.3
(0.5)
P 		253
(0.3)
P 		200
B 334.5
(3)
P 		315.9
(2.4)
P 		155.3
(-3)
P 		280.3
(1.2)
P 		253.4
(0.3)
P 		252.2
(0.2)
P 		179
C 320.6
(3)
P 		281.8
(1.3)
P 		192.7
(-2.8)
P 		240.2
(-0.6)
P 		187.5
(-3)
P 		281.2
(1.2)
P 		133
avr 332.8
(3) 		281.2
(1) 		181.6
(-3) 		221.3
(-1.4) 		233.4
(-0.9) 		262.1
(0.2) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 114.9
(3)
P 		32.1
(-3)
P 		39.5
(-2.5)
P 		37.8
(-2.6)
P 		83
B 72.5
(3)
P 		39.2
(-1.8)
P 		31.2
(-3)
P 		65.7
(2)
P 		41
C 72.7
(2.9)
P 		38.3
(-3)
P 		73.3
(3)
P 		46.2
(-1.6)
P 		35
avr 86.7
(3) 		36.5
(-3) 		48
(-1.6) 		49.9
(-1.4) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 63.3
(0.2)
P 		87.5
(3)
P 		42.9
(-2.2)
P 		36.4
(-3)
P 		78.3
(1.9)
P 		61.6
(-0)
P 		51
B 116.4
(3)
P 		105.1
(2.1)
P 		37.7
(-3)
P 		74.2
(-0.2)
P 		103
(2)
P 		94.1
(1.3)
P 		79
C 118.8
(3)
P 		86
(0.2)
P 		49
(-2.9)
P 		48.3
(-3)
P 		60.7
(-1.9)
P 		94.1
(0.9)
P 		71
avr 99.5
(3) 		92.9
(2.3) 		43.2
(-3) 		53
(-2) 		80.7
(1) 		83.3
(1.3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21068
Sequence Type Exemplar sequence
Representative Public ID AV181822 NCBI
Target Description AV181822_rc /REP_DB=TREMBL Accession /GB=AV181822 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk625c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066344 NCBI Caenorhabditis elegans CyclIn T family member (cit-1.2) (cit-1.2) mRNA, complete cds. 11/11 None
F44B9.3a ENSEMBL cdna:known chromosome:CEL140:III:8010702:8013637:1 gene:F44B9.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176126 2 1 NM_066344 175479_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8013337-8013625(+) 92.71 100.0
Public Domain and Genome References
Ensembl F44B9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28033 Cyclin t protein 1.2, isoform a [Caenorhabditis elegans] ref|NP_498745.1| CyclIn T family member (cit-1.2) [Caenorhabditis elegans] sp|P34424|CCNT2_CAEEL Cyclin T1.2 0.0
blast S44814 F44B9.3 protein - Caenorhabditis elegans 0.0
blast AAN63385 Cyclin t protein 1.2, isoform b [Caenorhabditis elegans] ref|NP_871655.1| CyclIn T family member (cit-1.2) [Caenorhabditis elegans] 1.0E-164
Sequence
Target Sequence 
>C. ELEGANS:175479_AT
ttccactcttgttgtcgacttttagatactattctcacctttttttctttcttttcatat
ttctatcttatcaaataatgatctcgatcctctcgtttcgttttttatcagtttcactgt
cttccttatttttcatttgatttgtttcaacggtattattttccttttttggcaactaaa
tctacgggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCACTCTTGTTGTCGACTTTTAG 299 701 47 Antisense
GTCGACTTTTAGATACTATTCTCAC 456 473 60 Antisense
AGATACTATTCTCACCTTTTTTTCT 701 65 70 Antisense
TTTTCTTTCTTTTCATATTTCTATC 377 677 89 Antisense
TCTTTTCATATTTCTATCTTATCAA 696 615 96 Antisense
ATAATGATCTCGATCCTCTCGTTTC 49 27 121 Antisense
ATCCTCTCGTTTCGTTTTTTATCAG 295 39 133 Antisense
GTTTCGTTTTTTATCAGTTTCACTG 399 451 141 Antisense
TTTCACTGTCTTCCTTATTTTTCAT 289 673 158 Antisense
TGATTTGTTTCAACGGTATTATTTT 305 563 184 Antisense
TTTTGGCAACTAAATCTACGGGATA 33 677 213 Antisense
Sequence Source Affymetrix Proprietary Database