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[175478_at]

Description AV182763_rc /REP_DB=TREMBL Accession /GB=AV182763 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk642c11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 40      6grp_total > 28      4grp_total > 43      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 666
1 2 3 4 range
A 1448.6
(-3)
P 		1745.1
(3)
P 		1598.1
(0)
P 		1654.1
(1.2)
P 		297
B 1577.2
(3)
P 		1457.7
(0.5)
P 		1289.7
(-3)
P 		1416.8
(-0.3)
P 		288
C 1291.4
(1.2)
P 		1385.1
(3)
P 		1323.5
(1.8)
P 		1078.8
(-3)
P 		306
avr 1439.1
(-0.7) 		1529.3
(3) 		1403.8
(-2.2) 		1383.2
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 533
1 2 3 4 5 6 range
A 964.1
(3)
P 		765.2
(0.6)
P 		496.5
(-2.7)
P 		476.1
(-3)
P 		768.4
(0.6)
P 		677.1
(-0.5)
P 		488
B 797.2
(3)
P 		741.5
(2.1)
P 		431.6
(-3)
P 		615
(0)
P 		520.3
(-1.5)
P 		635.9
(0.4)
P 		366
C 780.6
(3)
P 		719.7
(1.5)
P 		664
(0.1)
P 		537.2
(-3)
P 		609.9
(-1.2)
P 		590.9
(-1.7)
P 		243
avr 847.3
(3) 		742.1
(1) 		530.7
(-3) 		542.8
(-2.8) 		632.9
(-1.1) 		634.6
(-1) 		317
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 527.4
(3)
P 		378.8
(-0.1)
P 		417.8
(0.7)
P 		242.1
(-3)
P 		285
B 503
(3)
P 		360
(-1.2)
P 		298.9
(-3)
P 		301.9
(-2.9)
P 		204
C 427.5
(2.3)
P 		398.2
(1.6)
P 		461.3
(3)
P 		181.9
(-3)
P 		279
avr 486
(3) 		379
(0.4) 		392.7
(0.7) 		242
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 177.7
(-0.5)
P 		272.1
(3)
P 		108.1
(-3)
P 		120.7
(-2.5)
P 		231.9
(1.5)
P 		164.9
(-0.9)
P 		164
B 277.4
(3)
P 		246.8
(1.9)
P 		104.8
(-3)
P 		162.9
(-1)
P 		211.4
(0.7)
P 		237.1
(1.6)
P 		173
C 289.3
(3)
P 		219.6
(0.7)
P 		169
(-1)
P 		108
(-3)
P 		197.3
(-0)
P 		197.8
(-0)
P 		181
avr 248.1
(3) 		246.2
(2.9) 		127.3
(-3) 		130.5
(-2.8) 		213.5
(1.3) 		199.9
(0.6) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21215
Sequence Type Exemplar sequence
Representative Public ID AV182763 NCBI
Target Description AV182763_rc /REP_DB=TREMBL Accession /GB=AV182763 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk642c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067316 NCBI Caenorhabditis elegans Y39E4B.1 (Y39E4B.1) mRNA, complete cds. 11/11 None
Y39E4B.1 ENSEMBL cdna:known chromosome:CEL140:III:13153333:13159773:1 gene:Y39E4B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13159433-13159728(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-351
Ensembl Y39E4B.1
Entrez Gene 176733 Entrez gene
SwissProt Q9U2K8 EMBL-EBI
WormBase CE21713 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19678_G_AT RNase L inhibitor protein, putative at
ATGENOME1:19470_AT RNase L inhibitor protein, putative at
ATH1-121501:254615_AT RNase L inhibitor protein, putative at
CANINE_2:CFA.19800.1.S1_S_AT similar to ATP-binding cassette sub-family E member 1 (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) cfa
CANINE_2:CFA.20953.1.S1_S_AT similar to ATP-binding cassette sub-family E member 1 (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) cfa
CANINE_2:CFAAFFX.12261.1.S1_AT similar to ATP-binding cassette sub-family E member 1 (RNase L inhibitor) (Ribonuclease 4 inhibitor) (RNS4I) cfa
DROSOPHILA_2:1638274_S_AT dm
DROSGENOME1:148436_AT dm
CHICKEN:GGAAFFX.12411.1.S1_S_AT ATP-binding cassette, sub-family E (OABP), member 1 gga
HG-U133_PLUS_2:201873_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133A:201873_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133A_2:201873_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HU35KSUBB:RC_AA223912_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HU35KSUBC:RC_R50976_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HUGENEFL:X74987_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
U133_X3P:G4506558_3P_A_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
U133_X3P:HS.12013.0.A1_3P_A_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133A_2:201872_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-FOCUS:201872_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133_PLUS_2:201872_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U133A:201872_S_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U95AV2:39355_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U95B:54271_R_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
HG-U95E:70145_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
U133_X3P:HS.42788.0.A1_3P_AT ATP-binding cassette, sub-family E (OABP), member 1 hs
MU11KSUBA:AA674093_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MG-U74AV2:100568_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MG-U74CV2:169106_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOE430A:1416015_S_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOUSE430A_2:1416015_S_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOUSE430_2:1416015_S_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOE430A:1416014_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOUSE430A_2:1416014_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOUSE430_2:1416014_AT ATP-binding cassette, sub-family E (OABP), member 1 mm
MOE430B:1442071_AT ATP-binding cassette, sub-family E (OABP), member 1, mRNA (cDNA clone MGC:5781 IMAGE:3489529) mm
MOUSE430_2:1442071_AT ATP-binding cassette, sub-family E (OABP), member 1, mRNA (cDNA clone MGC:5781 IMAGE:3489529) mm
MU11KSUBA:AA408828_RC_AT ATP-binding cassette, sub-family E (OABP), member 1, mRNA (cDNA clone MGC:5781 IMAGE:3489529) mm
MU19KSUBA:TC17503_AT ATP-binding cassette, sub-family E (OABP), member 1, mRNA (cDNA clone MGC:5781 IMAGE:3489529) mm
RG-U34C:RC_AI169111_AT ATP-binding cassette, sub-family E (OABP), member 1 (predicted) rn
RAE230A:1388810_AT ATP-binding cassette, sub-family E (OABP), member 1 (predicted) rn
RAT230_2:1388810_AT ATP-binding cassette, sub-family E (OABP), member 1 (predicted) rn
YEAST_2:1778038_AT Essential iron-sulfur protein required for ribosome biogenesis and translation initiation; facilitates binding of a multifactor complex (MFC) of translation initiation factors to the small ribosomal subunit; predicted ABC family ATPase Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
5506 iron ion binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54424 Hypothetical protein Y39E4B.1 [Caenorhabditis elegans] ref|NP_499717.1| Y39E4B.1 [Caenorhabditis elegans] 0.0
blast CAE75081 Hypothetical protein CBG22999 [Caenorhabditis briggsae] 0.0
blast XP_623630 PREDICTED: similar to ribonuclease L inhibitor homolog [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001450 EMBL-EBI 4Fe-4S ferredoxin, iron-sulfur binding domain 7.8E-9
Pfam IPR007209 EMBL-EBI Possible metal-binding region in RNase L inhibitor, RLI 1.4E-14
Pfam IPR003439 EMBL-EBI ABC transporter 1.2E-18
Pfam IPR003439 EMBL-EBI ABC transporter 1.4E-26
Sequence
Target Sequence 
>C. ELEGANS:175478_AT
aggggatacgtatatcgcgatgcgtaatatctgtgctttgttgtatcgttttcttcatga
aaaattgcgttgtgccaggatccccttttggtagattaccttttcgcaaatccacttttt
gcagatccccttttcgtggggcctcgaaaatttcgttgttttttttttcgttaaatttat
caaagttttcattgaaaaataataggggttgctcttttcagcaagcccaactatttttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGGGATACGTATATCGCGATGCGT 503 55 25 Antisense
ATCGCGATGCGTAATATCTGTGCTT 195 37 38 Antisense
ATATCTGTGCTTTGTTGTATCGTTT 170 21 51 Antisense
TTGTTGTATCGTTTTCTTCATGAAA 315 705 62 Antisense
AAAAATTGCGTTGTGCCAGGATCCC 600 95 84 Antisense
TGCCAGGATCCCCTTTTGGTAGATT 167 585 97 Antisense
GTAGATTACCTTTTCGCAAATCCAC 210 455 115 Antisense
CGCAAATCCACTTTTTGCAGATCCC 140 255 129 Antisense
AATAATAGGGGTTGCTCTTTTCAGC 556 133 222 Antisense
GTTGCTCTTTTCAGCAAGCCCAACT 578 439 232 Antisense
TTTCAGCAAGCCCAACTATTTTTCT 588 669 240 Antisense
Sequence Source Affymetrix Proprietary Database