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[175477_at]

Description AV183083_rc /REP_DB=TREMBL Accession /GB=AV183083 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk646d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 39      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 80      6grp_total > 18      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 281.4
(-0.1)
P 		136.5
(-3)
P 		184.4
(-2)
P 		432.5
(3)
P 		296
B 290.2
(1.5)
P 		197.5
(-3)
P 		264.1
(0.2)
P 		321.6
(3)
P 		124
C 259.5
(-1)
P 		217.2
(-3)
P 		216.3
(-3)
P 		347.8
(3)
P 		132
avr 277
(0) 		183.7
(-3) 		221.6
(-1.8) 		367.3
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 273.1
(2.5)
P 		208.2
(-0.8)
P 		282.3
(3)
P 		249.3
(1.3)
P 		220.5
(-0.2)
P 		166.6
(-3)
P 		116
B 324.6
(3)
P 		256.2
(0.4)
P 		168.5
(-3)
P 		255.7
(0.4)
P 		272.6
(1)
P 		282
(1.4)
P 		156
C 236.6
(2.4)
P 		208.4
(0.1)
P 		171.4
(-3)
P 		173.8
(-2.8)
P 		203
(-0.4)
P 		244
(3)
P 		73
avr 278.1
(3) 		224.3
(-1.6) 		207.4
(-3) 		226.3
(-1.4) 		232
(-0.9) 		230.9
(-1) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 102.4
(3)
P 		29.6
(-3)
P 		48.2
(-1.5)
P 		63.3
(-0.2)
P 		73
B 92.5
(3)
P 		48.8
(-3)
P 		61.2
(-1.3)
P 		68.5
(-0.3)
P 		44
C 85.9
(3)
P 		62.5
(-2.1)
P 		75.4
(0.7)
P 		58.6
(-3)
P 		27
avr 93.6
(3) 		47
(-3) 		61.6
(-1.1) 		63.5
(-0.9) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 50.3
(-1.3)
P 		74
(3)
P 		61.5
(0.8)
P 		63.2
(1.1)
P 		66.5
(1.7)
P 		40.6
(-3)
P 		33
B 112.9
(3)
P 		85.3
(0.7)
P 		40.9
(-3)
P 		67.7
(-0.8)
P 		110.8
(2.8)
P 		105.1
(2.4)
P 		72
C 87.7
(3)
P 		63.6
(0.3)
P 		43.6
(-2)
P 		35
(-3)
P 		65.7
(0.5)
P 		81.7
(2.3)
P 		53
avr 83.6
(3) 		74.3
(1.4) 		48.7
(-3) 		55.3
(-1.9) 		81
(2.6) 		75.8
(1.7) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175477_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21072
Sequence Type Exemplar sequence
Representative Public ID AV183083 NCBI
Target Description AV183083_rc /REP_DB=TREMBL Accession /GB=AV183083 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk646d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T23F11.4 ENSEMBL cdna:known chromosome:CEL140:III:4663214:4665322:-1 gene:T23F11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4663223-4663503(-) 100.0 100.0
Public Domain and Genome References
Ensembl T23F11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86459 Hypothetical protein T23F11.4 [Caenorhabditis elegans] ref|NP_497952.1| T23F11.4 [Caenorhabditis elegans] 1.0E-175
blast CAE71165 Hypothetical protein CBG18022 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:175477_AT
ctgattttccattagatattctgattagcttttagagtacaattcaggtttcactgaaaa
tgtaattatttctataatactctcattcattccatctttaaaaaaaaccaattgtgatat
tcagtatagaaaccatcgaatcatatcgtttgaaccatttttcttccgtctgtgttgtta
attaacttattaaagttttattagaatgatacatagttttaaaaatcatatttcccattg
tgattgttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGATTTTCCATTAGATATTCTGAT 400 239 13 Antisense
GATATTCTGATTAGCTTTTAGAGTA 390 427 27 Antisense
TTAGAGTACAATTCAGGTTTCACTG 485 667 44 Antisense
TATTTCTATAATACTCTCATTCATT 164 663 79 Antisense
ATAATACTCTCATTCATTCCATCTT 106 27 86 Antisense
GTGATATTCAGTATAGAAACCATCG 656 483 126 Antisense
GAAACCATCGAATCATATCGTTTGA 390 359 141 Antisense
TATCGTTTGAACCATTTTTCTTCCG 323 659 156 Antisense
TTTTTCTTCCGTCTGTGTTGTTAAT 662 673 170 Antisense
TTCTTCCGTCTGTGTTGTTAATTAA 70 691 173 Antisense
TCATATTTCCCATTGTGATTGTTCT 121 621 238 Antisense
Sequence Source Affymetrix Proprietary Database