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[175476_s_at] acyl-carrier protein

Description AV178169_rc /REP_DB=TREMBL Accession /GB=AV178169 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 33      6grp_total > 43      4grp_total > 58      6grp_high1_sub > 03      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1515
1 2 3 4 range
A 1273.5
(-0.5)
P 		1883.3
(2.1)
P 		2084.9
(3)
P 		706.8
(-3)
P 		1378
B 1212
(0.1)
P 		1751.9
(2.8)
P 		1801.3
(3)
P 		593.6
(-3)
P 		1208
C 1309
(-0.4)
P 		1799.1
(1.7)
P 		2108.6
(3)
P 		698.5
(-3)
P 		1410
avr 1264.8
(-0.3) 		1811.4
(2.2) 		1998.3
(3) 		666.3
(-3) 		1332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 971
1 2 3 4 5 6 range
A 1571.8
(-1.5)
P 		1749.4
(-0.3)
P 		2216
(3)
P 		1670.7
(-0.8)
P 		1356.7
(-3)
P 		1396.1
(-2.7)
P 		859
B 1506.5
(-1.9)
P 		1890.1
(2.5)
P 		1932.2
(3)
P 		1414.8
(-3)
P 		1654.8
(-0.2)
P 		1513.3
(-1.9)
P 		517
C 1815.1
(1.5)
P 		2011.6
(3)
P 		1942.9
(2.5)
P 		1244.8
(-3)
P 		1587.8
(-0.3)
P 		1364.2
(-2.1)
P 		767
avr 1631.1
(-1) 		1883.7
(1.5) 		2030.4
(3) 		1443.4
(-2.8) 		1533.1
(-1.9) 		1424.5
(-3) 		606
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 631
1 2 3 4 range
A 463.7
(1.9)
P 		408.8
(1.1)
P 		545
(3)
P 		103.5
(-3)
P 		442
B 386.5
(2.1)
P 		432.7
(3)
P 		417.4
(2.7)
P 		126.5
(-3)
P 		306
C 433.3
(0.1)
P 		517.2
(0.9)
P 		734.9
(3)
P 		117.8
(-3)
P 		617
avr 427.8
(1.2) 		452.9
(1.5) 		565.8
(3) 		115.9
(-3) 		450

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 289.8
(-3)
P 		622.2
(3)
P 		482.6
(0.5)
P 		423.7
(-0.6)
P 		409.4
(-0.8)
P 		339.9
(-2.1)
P 		332
B 524.2
(0)
P 		629.1
(2.1)
P 		469.2
(-1.1)
P 		374.7
(-3)
P 		672.3
(3)
P 		564.3
(0.8)
P 		298
C 672.8
(3)
P 		613.8
(2.2)
P 		494.5
(0.5)
P 		250.3
(-3)
P 		513.8
(0.7)
P 		456.7
(-0.1)
P 		423
avr 495.6
(0.2) 		621.7
(3) 		482.1
(-0.1) 		349.6
(-3) 		531.8
(1) 		453.6
(-0.7) 		272
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175476_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21073
Sequence Type Exemplar sequence
Representative Public ID AV178169 NCBI
Target Description AV178169_rc /REP_DB=TREMBL Accession /GB=AV178169 /CHR=3 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067148(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067148 NCBI Caenorhabditis elegans Y56A3A.19 (Y56A3A.19) mRNA, complete cds. 11/11 A 
SNAP00000035196 ENSEMBL cdna:SNAP chromosome:CEL140:III:11911024:11915586:-1 11/11 None
GENEFINDER00000035214 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11915129:11915586:-1 11/11 None
Y56A3A.19 ENSEMBL cdna:known chromosome:CEL140:III:11915027:11915590:-1 gene:Y56A3A.19 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11915100-11915445(-) 100.0 100.0
Public Domain and Genome References
Gene Title acyl-carrier protein
Ensembl Y56A3A.19
Entrez Gene 176622 Entrez gene
SwissProt Q9U241 EMBL-EBI
WormBase CE22587 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589555_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE:1586950_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFA.10920.1.S1_S_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFA.10920.1.S1_X_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFA.16090.1.A1_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFA.9610.1.A1_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
CANINE_2:CFAAFFX.26929.1.S1_S_AT similar to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (CI-SDAP) cfa
DROSOPHILA_2:1634955_AT mitochondrial acyl carrier protein 1 dm
DROSOPHILA_2:1624776_A_AT mitochondrial acyl carrier protein 1 dm
DROSOPHILA_2:1624715_AT mitochondrial acyl carrier protein 1 dm
DROSGENOME1:143658_AT mitochondrial acyl carrier protein 1 dm
CHICKEN:GGA.2627.1.S1_A_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa gga
HG-U133A:202077_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-U133_PLUS_2:202077_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-FOCUS:202077_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-U133A_2:202077_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HU35KSUBA:RC_AA152103_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
U133_X3P:G4826851_3P_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-U95AV2:35297_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HG-U95C:55938_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HU35KSUBB:RC_R11499_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
HU35KSUBC:RC_D20172_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa hs
MOUSE430_2:1447919_X_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOE430A:1447919_X_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430A_2:1447919_X_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MG-U74AV2:96909_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MG-U74AV2:161122_F_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOE430A:1435934_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430A_2:1435934_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430_2:1435934_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOE430A:1428159_S_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430A_2:1428159_S_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430_2:1428159_S_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOUSE430_2:1453565_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MOE430B:1453565_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 mm
MG-U74BV2:116647_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MOE430B:1458678_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MOUSE430_2:1458678_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MG-U74CV2:170724_R_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MU11KSUBA:AA023445_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MU19KSUBA:TC17949_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
MU19KSUBB:TC33901_S_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (Ndufab1), mRNA mm
RT-U34:AA799336_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (predicted) rn
RG-U34A:AA799336_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (predicted) rn
RAE230A:1389964_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (predicted) rn
RAT230_2:1389964_AT NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6633 fatty acid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
36 acyl carrier activity inferred from electronic annotation QuickGO AmiGO
48037 cofactor binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60497 Hypothetical protein Y56A3A.16 [Caenorhabditis elegans] ref|NP_499548.1| Y56A3A.16 [Caenorhabditis elegans] 0.0
blast CAE67736 Hypothetical protein CBG13311 [Caenorhabditis briggsae] 0.0
blast CAB60498 Hypothetical protein Y56A3A.19 [Caenorhabditis elegans] ref|NP_499549.1| Y56A3A.19 [Caenorhabditis elegans] 2.0E-67
blast CAB60498 Hypothetical protein Y56A3A.19 [Caenorhabditis elegans] ref|NP_499549.1| Y56A3A.19 [Caenorhabditis elegans] 3.0E-64
blast CAE67737 Hypothetical protein CBG13312 [Caenorhabditis briggsae] 1.0E-61
blast EAL29946 GA21583-PA [Drosophila pseudoobscura] 9.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR006163 EMBL-EBI Phosphopantetheine-binding domain 3.8E-16
Sequence
Target Sequence 
>C. ELEGANS:175476_S_AT
tccactgaccaaaaagacactcgaggagcgaattgtgttggttctctcactctacgacaa
aatcgacgcgaagaagctcacaatggactcggatttctcgaaagatctcggcctcgactc
tctggatcacgtagaagttgtgatggcgatggaggaagagtttggattcgagattcccga
cggagatgcggatcgcttcaagacgccacgcgacatcttccagtacatcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTGACCAAAAAGACACTCGAG 212 589 22 Antisense
AAAGACACTCGAGGAGCGAATTGTG 80 123 34 Antisense
GGAGCGAATTGTGTTGGTTCTCTCA 698 521 46 Antisense
AATTGTGTTGGTTCTCTCACTCTAC 523 179 52 Antisense
TCTACGACAAAATCGACGCGAAGAA 146 603 72 Antisense
CGCGAAGAAGCTCACAATGGACTCG 211 251 88 Antisense
GAAGTTGTGATGGCGATGGAGGAAG 689 337 155 Antisense
GAGTTTGGATTCGAGATTCCCGACG 57 397 179 Antisense
TTGGATTCGAGATTCCCGACGGAGA 461 709 183 Antisense
GATTCGAGATTCCCGACGGAGATGC 124 433 186 Antisense
ACGCGACATCTTCCAGTACATCGCC 359 91 229 Antisense
Sequence Source Affymetrix Proprietary Database