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[175475_s_at] serine/threonine kinase

Description AV182135_rc /REP_DB=TREMBL Accession /GB=AV182135 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk633g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 10      6grp_total > 16      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1084
1 2 3 4 range
A 1775.4
(3)
P 		1408.7
(-0.1)
P 		1076.3
(-3)
P 		1637.6
(1.8)
P 		699
B 2160.2
(3)
P 		1372.4
(-3)
P 		1537.3
(-1.7)
P 		1972.2
(1.6)
P 		788
C 1654.6
(2.6)
P 		1253.8
(-3)
P 		1681.1
(3)
P 		1681
(3)
P 		427
avr 1863.4
(3) 		1345
(-3) 		1431.6
(-2) 		1763.6
(1.8) 		518

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1482
1 2 3 4 5 6 range
A 1552.2
(3)
P 		1121.2
(-0.2)
P 		1103
(-0.3)
P 		741.7
(-3)
P 		961.8
(-1.4)
P 		818.1
(-2.4)
P 		811
B 1853.9
(3)
P 		1738.1
(2.3)
P 		1152.8
(-1.4)
P 		912.7
(-2.9)
P 		932.1
(-2.8)
P 		895.8
(-3)
P 		958
C 2223.4
(3)
P 		1403.5
(-0.4)
P 		792.5
(-3)
P 		799.3
(-3)
P 		1071.8
(-1.8)
P 		977.8
(-2.2)
P 		1431
avr 1876.5
(3) 		1420.9
(0.4) 		1016.1
(-1.9) 		817.9
(-3) 		988.6
(-2) 		897.2
(-2.6) 		1059
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 646.4
(3)
P 		305.8
(-2)
P 		281.4
(-2.4)
P 		239.7
(-3)
P 		407
B 688.9
(3)
P 		338.9
(-3)
P 		356.2
(-2.7)
P 		420.3
(-1.6)
P 		350
C 547.7
(2.2)
P 		360.5
(-1.5)
P 		585.9
(3)
P 		283.4
(-3)
P 		303
avr 627.7
(3) 		335.1
(-2.6) 		407.8
(-1.2) 		314.5
(-3) 		313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 663
1 2 3 4 5 6 range
A 286.1
(-0.2)
P 		398.8
(3)
P 		240.2
(-1.5)
P 		188.1
(-3)
P 		290.2
(-0.1)
P 		199.2
(-2.7)
P 		211
B 645.1
(3)
P 		578.5
(2)
P 		279.9
(-2.4)
P 		241.7
(-3)
P 		378.7
(-1)
P 		334
(-1.6)
P 		403
C 824.1
(3)
P 		428.3
(-0.6)
P 		201.7
(-2.6)
P 		160.7
(-3)
P 		346.8
(-1.3)
P 		327.3
(-1.5)
P 		663
avr 585.1
(3) 		468.5
(1.2) 		240.6
(-2.3) 		196.8
(-3) 		338.6
(-0.8) 		286.8
(-1.6) 		388
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175475_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22311
Sequence Type Exemplar sequence
Representative Public ID AV182135 NCBI
Target Description AV182135_rc /REP_DB=TREMBL Accession /GB=AV182135 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk633g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078172 NCBI Caenorhabditis elegans K09A9.1 (K09A9.1) mRNA, complete cds. 11/11 None
K09A9.1 ENSEMBL cdna:known chromosome:CEL140:X:15607887:15611729:1 gene:K09A9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15610178-15610480(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl K09A9.1
Entrez Gene 181650 Entrez gene
SwissProt Q93872 EMBL-EBI
WormBase CE33670 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01883 Hypothetical protein K09A9.1 [Caenorhabditis elegans] ref|NP_510573.2| K09A9.1 [Caenorhabditis elegans] 0.0
blast CAE63334 Hypothetical protein CBG07734 [Caenorhabditis briggsae] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-6
Sequence
Target Sequence 
>C. ELEGANS:175475_S_AT
tccaactttctgtatgttctctcgcatccttgtaattaactcgtcagaaattcttattct
accaactttcaaaattccgaatattttagaaaatctgtaatgtaattcaaggtcgacaaa
ctacctctatgggtgttttatttatcatcatgtctgttttttgtttcaatctccaacttc
atgtaactactcttatctcatataaggtctgccaatgtgtattcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAACTTTCTGTATGTTCTCTCGC 84 589 13 Antisense
GTTCTCTCGCATCCTTGTAATTAAC 263 443 28 Antisense
GCATCCTTGTAATTAACTCGTCAGA 27 307 36 Antisense
ACTCGTCAGAAATTCTTATTCTACC 170 99 51 Antisense
TACCAACTTTCAAAATTCCGAATAT 580 649 72 Antisense
GGTCGACAAACTACCTCTATGGGTG 217 499 123 Antisense
GGTGTTTTATTTATCATCATGTCTG 516 499 144 Antisense
ATCATGTCTGTTTTTTGTTTCAATC 652 29 159 Antisense
GTTTCAATCTCCAACTTCATGTAAC 530 449 175 Antisense
TTCATGTAACTACTCTTATCTCATA 25 689 190 Antisense
AAGGTCTGCCAATGTGTATTCCTCC 187 159 216 Antisense
Sequence Source Affymetrix Proprietary Database