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[175472_at]

Description AU115531_rc /REP_DB=TREMBL Accession /GB=AU115531 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk733g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 32      6grp_total > 23      4grp_total > 58      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 565
1 2 3 4 range
A 909
(0.5)
P 		794.9
(-3)
P 		989.5
(3)
P 		889.8
(-0.1)
P 		195
B 860.6
(-3)
P 		1117.1
(3)
P 		866.7
(-2.9)
P 		1033.3
(1)
P 		257
C 855.9
(0.9)
P 		957.4
(2.3)
P 		1015.1
(3)
P 		551.9
(-3)
P 		463
avr 875.2
(-0.7) 		956.5
(3) 		957.1
(3) 		825
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 708
1 2 3 4 5 6 range
A 1256
(3)
P 		1232.5
(2.7)
P 		927.9
(-1.3)
P 		1023.5
(-0.1)
P 		1095.3
(0.9)
P 		799.1
(-3)
P 		457
B 1347.3
(3)
P 		1067
(0)
P 		1257.5
(2)
P 		1287.4
(2.4)
P 		913.4
(-1.6)
P 		782.9
(-3)
P 		564
C 1296
(1.2)
P 		1058.2
(-1)
P 		1382.5
(2)
P 		1490.9
(3)
P 		914.9
(-2.3)
P 		838.7
(-3)
P 		652
avr 1299.8
(3) 		1119.2
(0.8) 		1189.3
(1.7) 		1267.3
(2.6) 		974.5
(-1) 		806.9
(-3) 		493
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 331
(3)
P 		172.5
(-1.7)
P 		258.7
(0.8)
P 		130.2
(-3)
P 		201
B 274.4
(2.9)
P 		275.9
(3)
P 		200.8
(-3)
P 		220.2
(-1.5)
P 		75
C 283.3
(1.4)
P 		275.2
(1.2)
P 		353.8
(3)
P 		93.1
(-3)
P 		261
avr 296.2
(3) 		241.2
(0.8) 		271.1
(2) 		147.8
(-3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 231.5
(-2.1)
P 		438.3
(3)
P 		202.1
(-2.8)
P 		259.6
(-1.4)
P 		330.5
(0.3)
P 		194.6
(-3)
P 		244
B 468.8
(3)
P 		355.2
(-0.9)
P 		305.4
(-2.5)
P 		341
(-1.3)
P 		371.1
(-0.3)
P 		292
(-3)
P 		177
C 480.4
(3)
P 		322.9
(-1.7)
P 		351.9
(-0.9)
P 		299.8
(-2.4)
P 		296.1
(-2.5)
P 		280.7
(-3)
P 		200
avr 393.6
(3) 		372.1
(2.1) 		286.5
(-1.7) 		300.1
(-1.1) 		332.6
(0.3) 		255.8
(-3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22075
Sequence Type Exemplar sequence
Representative Public ID AU115531 NCBI
Target Description AU115531_rc /REP_DB=TREMBL Accession /GB=AU115531 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk733g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171675 NCBI Caenorhabditis elegans ZC449.3b (ZC449.3) mRNA, complete cds. 11/11 None
ZC449.3b ENSEMBL cdna:known chromosome:CEL140:X:5017985:5021031:1 gene:ZC449.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171676 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023563 1/11 Cross Hyb Matching Probes None
SNAP00000023550 1/11 Cross Hyb Matching Probes None
ZC449.3a.1 1/11 Cross Hyb Matching Probes None
ZC449.3a.2 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180773 2 1 NM_171675 175472_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5020576-5020850(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC449.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69076 Hypothetical protein ZC449.3b [Caenorhabditis elegans] ref|NP_741776.1| ZC449.3b [Caenorhabditis elegans] 0.0
blast AAL11105 Hypothetical protein ZC449.3a [Caenorhabditis elegans] ref|NP_741777.1| ZC449.3a [Caenorhabditis elegans] 0.0
blast T29915 hypothetical protein ZC449.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.7E-46
Sequence
Target Sequence 
>C. ELEGANS:175472_AT
aatgtatcaacaccgtcttcgtcttccgtttgctatcttttaacttttggatggatcatc
cattttgtattattagtattatttgttcaatacctttttccccatttccactgttcacta
cggaatcattcatatcattttcctcgtccgtctcaactttccactacttgttgccttttt
tctttctaaactaccgaaacaaattcccatgcacctcatcatgttctacaatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTATCAACACCGTCTTCGTCTT 686 161 19 Antisense
GTCTTCCGTTTGCTATCTTTTAACT 53 469 39 Antisense
TCTTTTAACTTTTGGATGGATCATC 261 613 54 Antisense
CCCATTTCCACTGTTCACTACGGAA 350 257 119 Antisense
CACTGTTCACTACGGAATCATTCAT 284 199 127 Antisense
AATCATTCATATCATTTTCCTCGTC 322 171 142 Antisense
GTCTCAACTTTCCACTACTTGTTGC 681 469 168 Antisense
CAACTTTCCACTACTTGTTGCCTTT 673 187 172 Antisense
CTACCGAAACAAATTCCCATGCACC 438 225 209 Antisense
AAATTCCCATGCACCTCATCATGTT 687 115 219 Antisense
GCACCTCATCATGTTCTACAATTTT 394 315 229 Antisense
Sequence Source Affymetrix Proprietary Database