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[175471_s_at]

Description AU113375_rc /REP_DB=TREMBL Accession /GB=AU113375 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706g11 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 15.1
(-1.9)
A 		2.5
(-3)
A 		37.5
(-0.1)
A 		74.1
(3)
A 		72
B 23.2
(-1.1)
A 		5.7
(-3)
A 		12.4
(-2.3)
A 		60.5
(3)
A 		55
C 24.5
(-1.1)
A 		3.9
(-3)
A 		26.4
(-0.9)
A 		69.4
(3)
A 		66
avr 20.9
(-1.4) 		4
(-3) 		25.4
(-1) 		68
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 6.1
(-3)
A 		21.8
(-2.7)
A 		85.3
(-1.4)
A 		73.9
(-1.7)
P 		156.2
(-0.1)
P 		311.5
(3)
P 		305
B 25.5
(-2.7)
A 		13.4
(-3)
A 		12.4
(-3)
A 		75.8
(-1.6)
A 		137.4
(-0.2)
P 		283.7
(3)
P 		271
C 23.4
(-2.8)
A 		13
(-3)
A 		31
(-2.6)
A 		75.6
(-1.8)
P 		150
(-0.3)
P 		320.5
(3)
P 		308
avr 18.3
(-3) 		16.1
(-3) 		42.9
(-2.4) 		75.1
(-1.8) 		147.9
(-0.3) 		305.2
(3) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.5
(-0.1)
A 		0.6
(-3)
A 		9.8
(2.4)
A 		10.8
(3)
A 		10
B 7.4
(0.1)
A 		1.4
(-3)
A 		2.9
(-2.2)
A 		12.9
(3)
A 		12
C 8.1
(1)
A 		1.1
(-3)
A 		9.2
(1.6)
A 		11.7
(3)
A 		11
avr 7
(0.3) 		1
(-3) 		7.3
(0.5) 		11.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 1.1
(-3)
A 		7.8
(-2.5)
A 		18.6
(-1.6)
A 		18.7
(-1.6)
P 		47.1
(0.7)
P 		75.8
(3)
P 		75
B 8.9
(-2.7)
A 		4.5
(-2.9)
A 		3
(-3)
A 		20.1
(-2)
A 		55.8
(0.1)
P 		105.8
(3)
P 		103
C 8.7
(-2.7)
A 		4
(-3)
A 		7.9
(-2.8)
A 		15.2
(-2.3)
P 		48.5
(-0.4)
P 		107.3
(3)
P 		103
avr 6.2
(-2.9) 		5.4
(-3) 		9.8
(-2.7) 		18
(-2.2) 		50.5
(-0) 		96.3
(3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175471_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20196
Sequence Type Exemplar sequence
Representative Public ID AU113375 NCBI
Target Description AU113375_rc /REP_DB=TREMBL Accession /GB=AU113375 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk706g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060231(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060231 NCBI Caenorhabditis elegans T24D1.5 (T24D1.5) mRNA, complete cds. 11/11 None
GENEFINDER00000027671 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9961684:9968205:-1 11/11 None
SNAP00000027668 ENSEMBL cdna:SNAP chromosome:CEL140:I:9964367:9968205:-1 11/11 None
T24D1.5 ENSEMBL cdna:known chromosome:CEL140:I:9964332:9966478:-1 gene:T24D1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9964272-9964602(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24D1.5
Entrez Gene 172853 Entrez gene
SwissProt Q8WQC5 EMBL-EBI
WormBase CE29601 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03423 Hypothetical protein T24D1.2 [Caenorhabditis elegans] ref|NP_492631.1| T24D1.2 [Caenorhabditis elegans] 1.0E-166
blast CAD01083 Hypothetical protein T24D1.5 [Caenorhabditis elegans] ref|NP_492632.1| T24D1.5 [Caenorhabditis elegans] 1.0E-143
blast CAD01083 Hypothetical protein T24D1.5 [Caenorhabditis elegans] ref|NP_492632.1| T24D1.5 [Caenorhabditis elegans] 1.0E-136
blast CAB03425 Hypothetical protein T24D1.3 [Caenorhabditis elegans] ref|NP_492633.1| T24D1.3 [Caenorhabditis elegans] 1.0E-130
blast CAE60252 Hypothetical protein CBG03826 [Caenorhabditis briggsae] 3.0E-25
blast CAE60252 Hypothetical protein CBG03826 [Caenorhabditis briggsae] 7.0E-25
Sequence
Target Sequence 
>C. ELEGANS:175471_S_AT
caggcctattcgaacaggaactcctgatggaacatggggagattgcacaatgtgctttga
agttcctatcgagccacaaggatgtaatcgttgtcagcaaataattgggtgtagcgcatg
cattgttcactggcatcatcatgctctttctccatcttgccctctttgtcgacgaagatg
gtctcgacaaccggatgtttcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGCCTATTCGAACAGGAACTCCT 74 209 15 Antisense
AGGAACTCCTGATGGAACATGGGGA 326 53 30 Antisense
CATGGGGAGATTGCACAATGTGCTT 147 209 47 Antisense
CAATGTGCTTTGAAGTTCCTATCGA 15 183 62 Antisense
GAAGTTCCTATCGAGCCACAAGGAT 495 337 73 Antisense
AAGGATGTAATCGTTGTCAGCAAAT 178 161 92 Antisense
TGCATTGTTCACTGGCATCATCATG 171 579 133 Antisense
TCACTGGCATCATCATGCTCTTTCT 333 625 141 Antisense
TTGCCCTCTTTGTCGACGAAGATGG 641 699 171 Antisense
GACGAAGATGGTCTCGACAACCGGA 270 377 185 Antisense
GTCTCGACAACCGGATGTTTCAAAT 211 471 195 Antisense
Sequence Source Affymetrix Proprietary Database