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[175470_at]

Description AU115636_rc /REP_DB=TREMBL Accession /GB=AU115636 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk735a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 28      4grp_highest_8_8 > 40      4grp_high_8_8 > 50      6grp_highest_nonorm > 40      6grp_total > 28      4grp_total > 61      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 441
1 2 3 4 range
A 470.6
(3)
P 		425.2
(2.2)
P 		382.7
(1.5)
P 		110.1
(-3)
P 		361
B 517
(3)
P 		415.6
(1.5)
P 		371.1
(0.9)
P 		104.3
(-3)
P 		413
C 510.1
(3)
P 		365.9
(1)
P 		356.2
(0.9)
P 		76.5
(-3)
P 		434
avr 499.2
(3) 		402.2
(1.6) 		370
(1.1) 		97
(-3) 		402

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 825
1 2 3 4 5 6 range
A 1218
(3)
P 		612.2
(-1.4)
P 		392.8
(-3)
P 		394.7
(-3)
P 		668.2
(-1)
P 		538.4
(-1.9)
P 		825
B 948.5
(3)
P 		658.7
(-0.3)
P 		420
(-3)
P 		482.7
(-2.3)
P 		543.3
(-1.6)
P 		577.1
(-1.2)
P 		529
C 1180
(3)
P 		548.3
(-2.1)
P 		492.3
(-2.5)
P 		434.3
(-3)
P 		582.7
(-1.8)
P 		586.4
(-1.8)
P 		746
avr 1115.5
(3) 		606.4
(-1.5) 		435
(-3) 		437.2
(-3) 		598.1
(-1.6) 		567.3
(-1.8) 		681
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 171.3
(3)
P 		92.3
(-0.1)
P 		100
(0.2)
P 		16.1
(-3)
P 		155
B 164.9
(3)
P 		102.6
(0.4)
P 		86
(-0.3)
P 		22.2
(-3)
P 		143
C 168.8
(3)
P 		105.2
(0.6)
P 		124.1
(1.3)
P 		12.9
(-3)
P 		156
avr 168.3
(3) 		100
(0.3) 		103.4
(0.4) 		17.1
(-3) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 224.5
(3)
P 		217.7
(2.7)
P 		85.5
(-3)
P 		100.1
(-2.4)
P 		201.6
(2)
P 		131.1
(-1)
P 		139
B 330
(3)
P 		219.3
(0.1)
P 		102
(-3)
P 		127.9
(-2.3)
P 		220.7
(0.1)
P 		215.2
(-0)
P 		228
C 437.4
(3)
P 		167.3
(-1.6)
P 		125.3
(-2.3)
P 		87.3
(-3)
P 		188.6
(-1.3)
P 		196.3
(-1.1)
P 		350
avr 330.6
(3) 		201.4
(-0.4) 		104.3
(-3) 		105.1
(-3) 		203.6
(-0.4) 		180.9
(-1) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22168
Sequence Type Exemplar sequence
Representative Public ID AU115636 NCBI
Target Description AU115636_rc /REP_DB=TREMBL Accession /GB=AU115636 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk735a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076747 NCBI Caenorhabditis elegans F41B4.1 (F41B4.1) mRNA, complete cds. 11/11 A 
F41B4.1 ENSEMBL cdna:known chromosome:CEL140:X:6823847:6825790:-1 gene:F41B4.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018339 5/11 Cross Hyb Matching Probes None
GENEFINDER00000018346 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6823916-6824193(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41B4.1
Entrez Gene 180952 Entrez gene
SwissProt Q966J6 EMBL-EBI
WormBase CE30980 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85476 Hypothetical protein F41B4.1 [Caenorhabditis elegans] ref|NP_509148.2| F41B4.1 [Caenorhabditis elegans] 1.0E-143
blast CAE65796 Hypothetical protein CBG10901 [Caenorhabditis briggsae] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:175470_AT
tcaatccacatctacaagccgacatgttcatcaacagtacaatcgtccggcttcgacgat
tcacacaacgacttacaccactacttattaactcctcgatattctatgtataattttttc
aaatttttcttgcaattttttttcagaaaaatgttcttaaaattgttgcacgccaattat
cttcaaaagcttcaaattgtgctctacgtaactgttaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATCCACATCTACAAGCCGACAT 488 633 14 Antisense
AAGCCGACATGTTCATCAACAGTAC 132 149 29 Antisense
TCAACAGTACAATCGTCCGGCTTCG 273 629 44 Antisense
AATCGTCCGGCTTCGACGATTCACA 252 169 54 Antisense
GACGATTCACACAACGACTTACACC 259 377 68 Antisense
TTACACCACTACTTATTAACTCCTC 85 677 86 Antisense
TTAACTCCTCGATATTCTATGTATA 575 683 101 Antisense
ATGTTCTTAAAATTGTTGCACGCCA 247 47 164 Antisense
TTGTTGCACGCCAATTATCTTCAAA 354 707 176 Antisense
GCTTCAAATTGTGCTCTACGTAACT 6 305 202 Antisense
TTGTGCTCTACGTAACTGTTAATTT 269 709 210 Antisense
Sequence Source Affymetrix Proprietary Database