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[175468_at]

Description AV184608_rc /REP_DB=TREMBL Accession /GB=AV184608 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk667a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 90      6grp_total > 38      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 191.4
(1.5)
P 		131.6
(-1.9)
P 		111.9
(-3)
P 		216.8
(3)
P 		105
B 183.6
(-0.3)
P 		144.5
(-1.5)
P 		98.6
(-3)
P 		288.4
(3)
P 		190
C 180
(0.3)
P 		135.7
(-1.4)
P 		96
(-3)
P 		247
(3)
P 		151
avr 185
(0.3) 		137.3
(-1.6) 		102.2
(-3) 		250.7
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 177.9
(3)
P 		128.8
(0.2)
P 		73.4
(-3)
P 		130.1
(0.3)
P 		96
(-1.7)
P 		152.2
(1.5)
P 		105
B 145.2
(3)
P 		123.1
(-0.7)
P 		126.7
(-0.1)
P 		109.7
(-3)
P 		117.8
(-1.6)
P 		117.2
(-1.7)
P 		36
C 139.9
(1.3)
P 		116.4
(0)
P 		88.1
(-1.5)
P 		61.4
(-3)
P 		109.9
(-0.3)
P 		170.7
(3)
P 		109
avr 154.3
(3) 		122.8
(-0.2) 		96.1
(-3) 		100.4
(-2.6) 		107.9
(-1.8) 		146.7
(2.2) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 69.7
(3)
P 		28.6
(-3)
P 		29.3
(-2.9)
P 		31.7
(-2.5)
P 		41
B 58.6
(2.6)
P 		35.7
(-1)
P 		22.8
(-3)
P 		61.5
(3)
P 		39
C 59.6
(3)
P 		39
(-1.7)
P 		33.5
(-3)
P 		41.6
(-1.1)
P 		26
avr 62.6
(3) 		34.4
(-2) 		28.5
(-3) 		44.9
(-0.1) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 32.8
(0.4)
P 		45.8
(3)
P 		16
(-3)
P 		33
(0.4)
P 		29
(-0.4)
P 		37.1
(1.2)
P 		30
B 50.5
(3)
P 		41
(0.3)
P 		30.8
(-2.5)
P 		29.1
(-3)
P 		47.9
(2.3)
P 		43.7
(1.1)
P 		21
C 51.8
(2.3)
P 		35.5
(0.1)
P 		22.4
(-1.6)
P 		12.3
(-3)
P 		35.6
(0.1)
P 		57.1
(3)
P 		45
avr 45
(2.7) 		40.8
(1.6) 		23.1
(-3) 		24.8
(-2.6) 		37.5
(0.8) 		46
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175468_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21561
Sequence Type Exemplar sequence
Representative Public ID AV184608 NCBI
Target Description AV184608_rc /REP_DB=TREMBL Accession /GB=AV184608 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk667a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028186 NCBI Caenorhabditis elegans T04C4.1a (T04C4.1) mRNA, complete cds. 11/11 None
T04C4.1a ENSEMBL cdna:known chromosome:CEL140:IV:2222829:2235710:1 gene:T04C4.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177012 2 1 NM_001028186 175468_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2233819-2235701(+) 98.21 98.21
Public Domain and Genome References
Ensembl T04C4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023357 T04C4.1a [Caenorhabditis elegans] 0.0
blast NP_001023358 T04C4.1b [Caenorhabditis elegans] 0.0
blast AAZ32794 Hypothetical protein T04C4.1a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175468_AT
gaattccctacaattaacaccggatcgtgttcgtacaattattggttgtgatcattcgga
tcttcgtcttatcgtcaatgttgcagccgtctactggcctcctgttctccaatccgtgct
cggatgagctccgacaccttaaaaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCCCTACAATTAACACCGGAT 698 323 113 Antisense
ATTAACACCGGATCGTGTTCGTACA 161 11 125 Antisense
GGATCGTGTTCGTACAATTATTGGT 597 507 134 Antisense
AATTATTGGTTGTGATCATTCGGAT 564 175 149 Antisense
ATCATTCGGATCTTCGTCTTATCGT 285 31 163 Antisense
GGATCTTCGTCTTATCGTCAATGTT 122 513 170 Antisense
TATCGTCAATGTTGCAGCCGTCTAC 653 657 182 Antisense
TCAATGTTGCAGCCGTCTACTGGCC 583 631 187 Antisense
TGTTCTCCAATCCGTGCTCGGATGA 591 561 215 Antisense
TCCGTGCTCGGATGAGCTCCGACAC 376 593 225 Antisense
GATGAGCTCCGACACCTTAAAAAAT 571 409 235 Antisense
Sequence Source Affymetrix Proprietary Database