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[175467_at]

Description AV180510_rc /REP_DB=TREMBL Accession /GB=AV180510 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk608d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 85      6grp_total > 79      4grp_total > 15      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 445
1 2 3 4 range
A 750.7
(2.4)
P 		367.6
(-3)
P 		704
(1.7)
P 		794.2
(3)
P 		427
B 812.5
(3)
P 		616.2
(-1.8)
P 		568.1
(-3)
P 		786.8
(2.4)
P 		244
C 724.7
(1.1)
P 		564.1
(-2.8)
P 		557.2
(-3)
P 		800.1
(3)
P 		243
avr 762.6
(2.3) 		516
(-3) 		609.8
(-1) 		793.7
(3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 707
1 2 3 4 5 6 range
A 725.2
(-0.3)
P 		885.4
(1.1)
P 		402.5
(-3)
P 		598.9
(-1.3)
P 		885.4
(1.1)
P 		1109.3
(3)
P 		707
B 607.3
(-2.4)
P 		836.7
(3)
P 		580.6
(-3)
P 		688
(-0.5)
P 		661.8
(-1.1)
P 		794.4
(2)
P 		256
C 677.2
(-2.6)
P 		718.5
(-1.9)
P 		691.4
(-2.4)
P 		655.2
(-3)
P 		885
(0.9)
P 		1011.1
(3)
P 		356
avr 669.9
(-1.4) 		813.5
(0.7) 		558.2
(-3) 		647.4
(-1.7) 		810.7
(0.7) 		971.6
(3) 		413
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 273.3
(3)
P 		79.8
(-3)
P 		184
(0.2)
P 		116.3
(-1.9)
P 		194
B 259.1
(3)
P 		152.2
(-2)
P 		131.6
(-3)
P 		167.7
(-1.3)
P 		128
C 239.9
(3)
P 		162.2
(-1.4)
P 		194.2
(0.4)
P 		134.9
(-3)
P 		105
avr 257.4
(3) 		131.4
(-3) 		169.9
(-1.2) 		139.6
(-2.6) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 133.7
(-1.8)
P 		314.9
(3)
P 		87.6
(-3)
P 		151.9
(-1.3)
P 		267.2
(1.7)
P 		270.1
(1.8)
P 		227
B 211.3
(-0.3)
P 		278.5
(2.3)
P 		141
(-3)
P 		182.2
(-1.4)
P 		268.9
(1.9)
P 		296.2
(3)
P 		155
C 251
(0.5)
P 		219.2
(-0.5)
P 		176
(-1.7)
P 		131.8
(-3)
P 		286.4
(1.5)
P 		338.5
(3)
P 		207
avr 198.7
(-0.7) 		270.9
(1.9) 		134.9
(-3) 		155.3
(-2.3) 		274.2
(2) 		301.6
(3) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20331
Sequence Type Exemplar sequence
Representative Public ID AV180510 NCBI
Target Description AV180510_rc /REP_DB=TREMBL Accession /GB=AV180510 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk608d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV180510
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV180510 AV180510_rc /REP_DB=TREMBL Accession /GB=AV180510 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk608d10 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9130883-9131163(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175467_AT
gtattggaactgtaacactttcggttttcgcgtcttcgtcgtcgctccccaaaaacgcac
actgaataatcaaatcgggttctctatcaatcatcatgctcctctcttccgttcattctt
ttcatttccatgagctctttctttcggttttcattacttctttgccctaaacattcacaa
acacgcacacattcttcattaggtttcgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATTGGAACTGTAACACTTTCGGT 323 447 23 Antisense
CTCCCCAAAAACGCACACTGAATAA 283 233 67 Antisense
AATCAAATCGGGTTCTCTATCAATC 574 171 90 Antisense
TCTCTATCAATCATCATGCTCCTCT 187 613 103 Antisense
CCGTTCATTCTTTTCATTTCCATGA 222 265 131 Antisense
ATTTCCATGAGCTCTTTCTTTCGGT 436 15 146 Antisense
TCTTTCGGTTTTCATTACTTCTTTG 98 613 162 Antisense
TACTTCTTTGCCCTAAACATTCACA 348 645 177 Antisense
AAACATTCACAAACACGCACACATT 106 129 191 Antisense
AAACACGCACACATTCTTCATTAGG 588 127 201 Antisense
CACATTCTTCATTAGGTTTCGTTTT 37 197 210 Antisense
Sequence Source Affymetrix Proprietary Database