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[175466_at]

Description AV200016_rc /REP_DB=TREMBL Accession /GB=AV200016 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk555d10 : 3prime end, single read.
Cluster 6grp_total > 63      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 3.4
(-1.5)
A 		2.7
(-3)
A 		5.5
(3)
A 		3.6
(-1.1)
A 		3
B 4
(-2.7)
A 		37.9
(3)
A 		2.1
(-3)
A 		3.2
(-2.8)
A 		36
C 3.5
(-2.8)
A 		4
(-2.7)
A 		2.7
(-3)
A 		31.3
(3)
A 		29
avr 3.6
(-2.9) 		14.9
(3) 		3.4
(-3) 		12.7
(1.9) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 5.8
(-2.1)
A 		4.3
(-2.4)
A 		25.6
(3)
A 		2.1
(-3)
A 		7.6
(-1.6)
A 		9.5
(-1.1)
A 		24
B 4.9
(-2.7)
A 		3.4
(-3)
A 		23.3
(0.3)
A 		39.2
(3)
A 		3.6
(-3)
A 		7.2
(-2.4)
A 		36
C 2
(-3)
A 		4.7
(0.9)
A 		2.7
(-2)
A 		6.2
(3)
A 		5.8
(2.4)
A 		2.6
(-2.1)
A 		4
avr 4.2
(-3) 		4.1
(-3) 		17.2
(3) 		15.8
(2.4) 		5.7
(-2.3) 		6.4
(-1.9) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.2
(1.7)
A 		0.6
(-2.3)
A 		1.4
(3)
A 		0.5
(-3)
A 		1
B 1.3
(-2.5)
A 		9.4
(3)
A 		0.5
(-3)
A 		0.7
(-2.9)
A 		9
C 1.1
(-2.7)
A 		1.2
(-2.6)
A 		0.9
(-3)
A 		5.3
(3)
A 		4
avr 1.2
(-2.4) 		3.7
(3) 		0.9
(-3) 		2.2
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.1
(-2.3)
A 		1.5
(-1.8)
A 		5.6
(3)
A 		0.5
(-3)
A 		2.3
(-0.9)
A 		2.3
(-0.9)
A 		5
B 1.7
(-2.6)
A 		1.1
(-3)
A 		5.7
(-0)
A 		10.4
(3)
A 		1.5
(-2.7)
A 		2.7
(-2)
A 		9
C 0.7
(-3)
A 		1.4
(0.5)
A 		0.7
(-3)
A 		1.2
(-0.5)
A 		1.9
(3)
A 		0.9
(-2)
A 		1
avr 1.2
(-3) 		1.3
(-2.8) 		4
(3) 		4
(3) 		1.9
(-1.5) 		2
(-1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21841
Sequence Type Exemplar sequence
Representative Public ID AV200016 NCBI
Target Description AV200016_rc /REP_DB=TREMBL Accession /GB=AV200016 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk555d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV200016
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV200016 AV200016_rc /REP_DB=TREMBL Accession /GB=AV200016 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk555d10 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17599503-17599783(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175466_AT
tctcctcttggcttgtatgatattcttatatttttagtctcatctaatgtttgcgtggtc
agagctctttgaatataatttggcaccgctgctaaaatcatatcaatcatgatttggctt
tcatggatcatcagggcaaaggcatgatcttccgcgttctctatttcagttttgatagcc
gtttttgataggatgactgatcgggtgattatgggactgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCTCTTGGCTTGTATGATATTC 191 611 14 Antisense
TATTCTTATATTTTTAGTCTCATCT 402 663 34 Antisense
AGTCTCATCTAATGTTTGCGTGGTC 580 61 49 Antisense
GTTTGCGTGGTCAGAGCTCTTTGAA 625 451 62 Antisense
TGAATATAATTTGGCACCGCTGCTA 511 575 83 Antisense
GGCACCGCTGCTAAAATCATATCAA 659 535 95 Antisense
TTGGCTTTCATGGATCATCAGGGCA 155 709 127 Antisense
AGGGCAAAGGCATGATCTTCCGCGT 299 57 146 Antisense
CCGCGTTCTCTATTTCAGTTTTGAT 702 261 165 Antisense
CAGTTTTGATAGCCGTTTTTGATAG 143 207 180 Antisense
TGATCGGGTGATTATGGGACTGCAA 325 563 211 Antisense
Sequence Source Affymetrix Proprietary Database