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[175465_at]

Description AU115873_rc /REP_DB=TREMBL Accession /GB=AU115873 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737h12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 31      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_total > 34      4grp_total > 43      6grp_high1_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 130.7
(-3)
P 		170.1
(-0.2)
P 		215.2
(3)
P 		143.2
(-2.1)
P 		85
B 169.3
(-3)
P 		309.2
(3)
P 		168.4
(-3)
P 		168.9
(-3)
P 		141
C 262.5
(3)
P 		220.7
(0.9)
P 		140.7
(-3)
P 		187
(-0.7)
P 		122
avr 187.5
(-1.1) 		233.3
(3) 		174.8
(-2.2) 		166.4
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 108.8
(-1.6)
P 		221.9
(3)
P 		196.5
(2)
P 		75.2
(-3)
P 		79.9
(-2.8)
M 		84.2
(-2.6)
P 		147
B 128.4
(-0.2)
P 		83.7
(-3)
P 		178.9
(3)
P 		146.4
(1)
P 		169.5
(2.4)
P 		87.8
(-2.7)
P 		95
C 213.5
(3)
P 		176.1
(1.1)
P 		124.4
(-1.6)
P 		98.6
(-3)
P 		98.3
(-3)
P 		181.4
(1.3)
P 		115
avr 150.2
(1.4) 		160.6
(2.4) 		166.6
(3) 		106.7
(-3) 		115.9
(-2.1) 		117.8
(-1.9) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 47.6
(1.5)
P 		36.9
(-0.3)
P 		56.3
(3)
P 		21
(-3)
P 		35
B 54
(-0.3)
P 		76.4
(3)
P 		39
(-2.6)
P 		36
(-3)
P 		40
C 86.9
(3)
P 		63.5
(0.5)
P 		49
(-1.1)
P 		31.5
(-3)
P 		55
avr 62.8
(3) 		58.9
(2.3) 		48.1
(0.4) 		29.5
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 20.1
(-2.9)
P 		78.9
(3)
P 		42.8
(-0.6)
P 		19.1
(-3)
P 		24.1
(-2.5)
M 		20.5
(-2.9)
P 		60
B 44.7
(-0.5)
P 		27.9
(-3)
P 		43.4
(-0.7)
P 		38.8
(-1.4)
P 		68.9
(3)
P 		32.7
(-2.3)
P 		41
C 79.1
(3)
P 		53.7
(0.4)
P 		31.7
(-1.8)
P 		19.8
(-3)
P 		31.8
(-1.8)
P 		60.7
(1.1)
P 		59
avr 48
(1.8) 		53.5
(3) 		39.3
(-0.1) 		25.9
(-3) 		41.6
(0.4) 		38
(-0.4) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22152
Sequence Type Exemplar sequence
Representative Public ID AU115873 NCBI
Target Description AU115873_rc /REP_DB=TREMBL Accession /GB=AU115873 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk737h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076740 NCBI Caenorhabditis elegans H22K11.4 (H22K11.4) mRNA, complete cds. 11/11 A 
SNAP00000015667 ENSEMBL cdna:SNAP chromosome:CEL140:X:6787256:6789021:-1 11/11 None
GENEFINDER00000015670 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6787256:6789480:-1 11/11 None
H22K11.4 ENSEMBL cdna:known chromosome:CEL140:X:6787256:6789501:-1 gene:H22K11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6787281-6787615(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H22K11.4
Entrez Gene 180946 Entrez gene
SwissProt O76633 EMBL-EBI
WormBase CE37119 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16012 sarcoglycan complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39242 Hypothetical protein H22K11.4 [Caenorhabditis elegans] ref|NP_509141.2| H22K11.4 [Caenorhabditis elegans] 0.0
blast CAE65790 Hypothetical protein CBG10894 [Caenorhabditis briggsae] 0.0
blast T33382 hypothetical protein H22K11.4 - Caenorhabditis elegans 0.0
blast T33382 hypothetical protein H22K11.4 - Caenorhabditis elegans 1.0E-173
blast AAK39242 Hypothetical protein H22K11.4 [Caenorhabditis elegans] ref|NP_509141.2| H22K11.4 [Caenorhabditis elegans] 1.0E-172
Protein Domains
Database ID Description E-Value
Pfam IPR008908 EMBL-EBI Sarcoglycan alphaepsilon 1.0E-126
Pfam IPR008908 EMBL-EBI Sarcoglycan alphaepsilon 1.0E-126
Pfam IPR008908 EMBL-EBI Sarcoglycan alphaepsilon 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509141.2 1 299-321
H22K11.4 1 299-321
SNAP00000015667 1 189-211
GENEFINDER00000015670 1 314-336
Sequence
Target Sequence 
>C. ELEGANS:175465_AT
caacttctgagcatgggaccagacacgaactccactgcgccttctggaattcattcttat
ttacaatcaagaagtagagctccaagcactagtattgcgagatttagcaaaagtgcgagt
agacttaatgataaagaggatacaattgagcttctcccttcagttgatcatgtcccggtt
ggaaaacaaactgttgcagaagcggcaaaacagtgtggaagttctttgcatttgtacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTTCTGAGCATGGGACCAGACA 424 187 27 Antisense
AGCATGGGACCAGACACGAACTCCA 545 77 36 Antisense
TGCGCCTTCTGGAATTCATTCTTAT 318 585 62 Antisense
GGAATTCATTCTTATTTACAATCAA 591 533 72 Antisense
AATCAAGAAGTAGAGCTCCAAGCAC 156 171 91 Antisense
GAGCTCCAAGCACTAGTATTGCGAG 403 387 103 Antisense
AGGATACAATTGAGCTTCTCCCTTC 659 55 163 Antisense
TTCAGTTGATCATGTCCCGGTTGGA 430 665 185 Antisense
AACAAACTGTTGCAGAAGCGGCAAA 429 133 211 Antisense
AAGCGGCAAAACAGTGTGGAAGTTC 388 61 226 Antisense
GTGGAAGTTCTTTGCATTTGTACAG 538 491 241 Antisense
Sequence Source Affymetrix Proprietary Database