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[175464_s_at]

Description AV182333_rc /REP_DB=TREMBL Accession /GB=AV182333 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk636d10 : 3prime end, single read.
Cluster 4grp_high_8_8 > 0      6grp_total > 66      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 126.1
(3)
P 		51.9
(-1.6)
A 		29.9
(-3)
A 		75.4
(-0.2)
A 		96
B 75.3
(0.4)
P 		60.8
(-3)
P 		68.2
(-1.3)
A 		86.4
(3)
M 		26
C 73.5
(0.8)
P 		58.5
(-3)
A 		73.5
(0.8)
P 		82.3
(3)
P 		24
avr 91.6
(3) 		57.1
(-3) 		57.2
(-3) 		81.4
(1.2) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 50.6
(-1.3)
A 		56.2
(-0.8)
A 		30.9
(-3)
A 		67.2
(0.1)
A 		40.2
(-2.2)
P 		100.4
(3)
P 		70
B 47.1
(-3)
A 		51.7
(-2.6)
P 		82.7
(-0.3)
P 		71.1
(-1.2)
P 		50.7
(-2.7)
M 		125.3
(3)
P 		78
C 75
(-0.6)
M 		51.2
(-2.6)
P 		86.6
(0.3)
P 		45.7
(-3)
A 		50.9
(-2.6)
A 		120.1
(3)
P 		74
avr 57.6
(-2.1) 		53
(-2.5) 		66.7
(-1.3) 		61.3
(-1.8) 		47.3
(-3) 		115.3
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 45.9
(3)
P 		11.3
(-2.4)
A 		7.8
(-3)
A 		11
(-2.5)
A 		38
B 24
(3)
P 		15
(-3)
P 		15.8
(-2.5)
A 		18.4
(-0.7)
M 		9
C 24.3
(2.3)
P 		16.8
(-1.5)
A 		25.6
(3)
P 		13.9
(-3)
P 		12
avr 31.4
(3) 		14.4
(-3) 		16.4
(-2.3) 		14.4
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 9.3
(-2.1)
A 		20
(1.5)
A 		6.7
(-3)
A 		17
(0.5)
A 		12.1
(-1.2)
P 		24.4
(3)
P 		18
B 16.4
(-3)
A 		17.2
(-2.8)
P 		20.1
(-2.3)
P 		18.8
(-2.5)
P 		20.6
(-2.2)
M 		46.7
(3)
P 		30
C 27.8
(0.6)
M 		15.6
(-1.8)
P 		22
(-0.5)
P 		9.2
(-3)
A 		16.5
(-1.6)
A 		40.2
(3)
P 		31
avr 17.8
(-2.2) 		17.6
(-2.3) 		16.3
(-2.6) 		15
(-3) 		16.4
(-2.6) 		37.1
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175464_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21339
Sequence Type Exemplar sequence
Representative Public ID AV182333 NCBI
Target Description AV182333_rc /REP_DB=TREMBL Accession /GB=AV182333 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk636d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069607 NCBI Caenorhabditis elegans T11G6.5 (T11G6.5) mRNA, complete cds. 11/11 A 
SNAP00000000762 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10836254:10842717:-1 11/11 None
GENEFINDER00000000775 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10836254:10842717:-1 11/11 None
T11G6.5 ENSEMBL cdna:known chromosome:CEL140:IV:10835810:10842727:-1 gene:T11G6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10839957-10840236(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T11G6.5
Entrez Gene 177976 Entrez gene
SwissProt Q22411 EMBL-EBI
WormBase CE32932 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97443 Hypothetical protein T11G6.5 [Caenorhabditis elegans] emb|CAA93420.2| Hypothetical protein T11G6.5 [Caenorhabditis elegans] ref|NP_502008.2| T11G6.5 [Caenorhabditis elegans] 0.0
blast AAK39363 Hypothetical protein Y73B3A.9 [Caenorhabditis elegans] ref|NP_508063.1| Y73B3A.9 [Caenorhabditis elegans] 5.0E-40
blast AAK39355 Hypothetical protein Y73B3A.10 [Caenorhabditis elegans] ref|NP_508062.2| Y73B3A.10 [Caenorhabditis elegans] 1.0E-15
Sequence
Target Sequence 
>C. ELEGANS:175464_S_AT
tcccacaccacgatcattcaattttgtcattcgatgagatgaggaaacaggaggagattg
aaaaaagacagcaaggacaagatgaagttgtacaacttcaattgggaaagactgatatag
aaaaccaaggaactgacgatgtatttaaacaagcaatttctcgaactaatgcccaaagag
aaagtgttgaaagggaatcctcacagtcaccacagctttatgatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCACACCACGATCATTCAATTTT 213 599 18 Antisense
CACCACGATCATTCAATTTTGTCAT 253 203 23 Antisense
ATTCAATTTTGTCATTCGATGAGAT 590 11 33 Antisense
AGTTGTACAACTTCAATTGGGAAAG 211 59 103 Antisense
GAAAACCAAGGAACTGACGATGTAT 36 355 137 Antisense
AAGGAACTGACGATGTATTTAAACA 386 161 144 Antisense
ATTTAAACAAGCAATTTCTCGAACT 275 15 160 Antisense
GCAATTTCTCGAACTAATGCCCAAA 307 323 170 Antisense
GAACTAATGCCCAAAGAGAAAGTGT 528 347 180 Antisense
GAAAGGGAATCCTCACAGTCACCAC 345 361 206 Antisense
ACAGTCACCACAGCTTTATGATCCC 45 109 220 Antisense
Sequence Source Affymetrix Proprietary Database